PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_32635_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB | ||||||||
Protein Properties | Length: 173aa MW: 20247.7 Da PI: 10.6112 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61 | 2.4e-19 | 39 | 86 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd++l++ ++ +G++ WktIa + g++R++k+c++rw +yl cra_locus_32635_iso_1_len_517_ver_3 39 RGAWTDEEDQRLAETIEIFGPKKWKTIAVKAGLNRCGKSCRLRWMNYL 86 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.1 | 3e-16 | 92 | 137 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l cra_locus_32635_iso_1_len_517_ver_3 92 RGNISDQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 137 78999*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.841 | 34 | 90 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.5E-29 | 37 | 133 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-14 | 38 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-17 | 39 | 86 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.6E-24 | 40 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.15E-9 | 41 | 86 | No hit | No description |
SMART | SM00717 | 1.9E-15 | 91 | 139 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.665 | 91 | 141 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.3E-14 | 92 | 137 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-25 | 94 | 141 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.46E-9 | 96 | 137 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
XERNQEKAMA AMNDQSSKEE VREAIGAAKN QKGKKEVNRG AWTDEEDQRL AETIEIFGPK 60 KWKTIAVKAG LNRCGKSCRL RWMNYLRPNI KRGNISDQEE DLILRLHKLL GNRWSLIAGR 120 LPGRTDNEIK NYWNSHLSKK VEEQGKNRQE EEGHHGRRRK RRKMNAVEVK EEK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-32 | 36 | 141 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 155 | 163 | GRRRKRRKM |
2 | 156 | 162 | RRRKRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor. | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:11585796, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16207757}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transcriptional activation correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in N cells. Repressed by CPC in hair cells (H position). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:16176989}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027125295.1 | 4e-74 | transcription factor WER-like | ||||
Swissprot | P10290 | 8e-50 | MYBC_MAIZE; Anthocyanin regulatory C1 protein | ||||
Swissprot | Q9SEI0 | 3e-50 | WER_ARATH; Transcription factor WER | ||||
TrEMBL | A0A1Q3CRE7 | 6e-72 | A0A1Q3CRE7_CEPFO; Myb_DNA-binding domain-containing protein | ||||
STRING | XP_004303466.1 | 1e-68 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |