PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_3219_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 212aa MW: 22769.6 Da PI: 10.2963 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.4 | 1.8e-14 | 33 | 77 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a +++ + Wk+I +g +t q++s+ qky cra_locus_3219_iso_2_len_935_ver_3 33 RESWTEEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 77 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.8E-18 | 27 | 83 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.291 | 28 | 82 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 5.0E-19 | 31 | 80 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.5E-7 | 31 | 83 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-11 | 32 | 80 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-12 | 33 | 77 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.71E-10 | 35 | 78 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0032922 | Biological Process | circadian regulation of gene expression | ||||
GO:0043966 | Biological Process | histone H3 acetylation | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MANSVAASDG SGSTSGSGSG KKVRKPYTIT KSRESWTEEE HDKFLEALQL FDRDWKKIED 60 FVGSKTVIQI RSHAQKYFLK VQKNGTIAHV PPPRPKRKAA HPYPQKAPKN VLVPAQASIG 120 YPSAVNSLAP GYPTWDDASL LVSVPPSGIL PSQDEYNLHG AEADIGSKGA TRISNSNISG 180 IGSSSRTLPA SEVPKQGKQG SLVHGNQRVI FP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:21474993, ECO:0000269|PubMed:21483796, ECO:0000269|PubMed:23638299}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00338 | DAP | Transfer from AT3G09600 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:22902701, ECO:0000269|PubMed:23638299}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027070765.1 | 1e-124 | protein REVEILLE 8 isoform X1 | ||||
Refseq | XP_027175530.1 | 1e-124 | protein REVEILLE 8-like isoform X1 | ||||
Swissprot | Q8RWU3 | 4e-90 | RVE8_ARATH; Protein REVEILLE 8 | ||||
TrEMBL | A1DR84 | 1e-146 | A1DR84_CATRO; MYB transcription factor | ||||
STRING | Solyc10g084370.1.1 | 1e-110 | (Solanum lycopersicum) |