PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_32145_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | Trihelix | ||||||||
Protein Properties | Length: 253aa MW: 28409.5 Da PI: 8.9211 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 96.6 | 2.2e-30 | 65 | 150 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrts 73 rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r cra_locus_32145_iso_1_len_756_ver_3 65 RWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR-- 136 8*************************************999*****************************98.. PP trihelix 74 essstcpyfdqlea 87 ++ +++++f+qlea cra_locus_32145_iso_1_len_756_ver_3 137 QDGKHYRFFRQLEA 150 55667*******85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.98 | 64 | 123 | IPR017877 | Myb-like domain |
CDD | cd12203 | 3.06E-22 | 65 | 130 | No hit | No description |
Pfam | PF13837 | 7.2E-21 | 65 | 151 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046621 | Biological Process | negative regulation of organ growth | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048498 | Biological Process | establishment of petal orientation | ||||
GO:0090428 | Biological Process | perianth development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
XRSLTPAQHY HEMVLVGTGS GAGLQHHEFL AEASTAAAAS GGGFSGLEMD ISGGIGGGVD 60 GGNGRWPRQE TLTLLEIRSR LDPKFKEANQ KGPLWDEVSR IMSEEHGYQR SGKKCREKFE 120 NLYKYYKKTK EGKAGRQDGK HYRFFRQLEA LYGETSNLNA ASENHHHHPM GTSTSSYHYN 180 AGNNMTNQEQ VFHQALDQKP SDSLSLSNSS DFDSTNSSEE NDSNDSNDHE RRRKRSKGKR 240 TWKAKCYRFS GYX |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 233 | 239 | KRSKGKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022864074.1 | 3e-85 | trihelix transcription factor PTL-like | ||||
Swissprot | Q9LZS0 | 2e-62 | PTL_ARATH; Trihelix transcription factor PTL | ||||
TrEMBL | A0A067LF24 | 2e-78 | A0A067LF24_JATCU; Uncharacterized protein | ||||
TrEMBL | A0A0L9U885 | 3e-79 | A0A0L9U885_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A371IB98 | 3e-78 | A0A371IB98_MUCPR; Trihelix transcription factor PTL (Fragment) | ||||
STRING | EMJ05326 | 3e-77 | (Prunus persica) | ||||
STRING | XP_007162858.1 | 3e-77 | (Phaseolus vulgaris) |
Publications ? help Back to Top | |||
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