PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_31800_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MIKC_MADS
Protein Properties Length: 161aa    MW: 18499.7 Da    PI: 4.6146
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_31800_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF27.93.1e-092282450
                                         HHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                               SRF-TF 24 AeELSvLCdaevaviifsstgklyeys 50
                                         A+E+ vLCd+++a+i++s++g++  +s
  cra_locus_31800_iso_1_len_481_ver_3  2 AYEIAVLCDIDIALIMISPSGRISFFS 28
                                         9********************987665 PP

2K-box18.96.5e-0881158784
                                K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieel 80 
                                           +  ++++e +++e+ +L+ ++e+ ++++R l  +     sl+eL++ e+ L k l+ i ++K+ ll ++ +  
  cra_locus_31800_iso_1_len_481_ver_3  81 PRHLSSHTEGYRKEIINLQHQLEMAKEQLRVLEPDPQRFTSLNELESCEELLSKTLSIIEQRKKTLLNNHASSY 154
                                          44667899**************************************************************9999 PP

                                K-box  81 qkke 84 
                                          q+  
  cra_locus_31800_iso_1_len_481_ver_3 155 QETV 158
                                          8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006610.582131IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-9250IPR002100Transcription factor, MADS-box
PfamPF003191.8E-6224IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
XAYEIAVLCD IDIALIMISP SGRISFFSGT RRIEDVMLQY FHLSDEEKEL DQDSEGLVND  60
RECVISTLMR LKAEAGVSQS PRHLSSHTEG YRKEIINLQH QLEMAKEQLR VLEPDPQRFT  120
SLNELESCEE LLSKTLSIIE QRKKTLLNNH ASSYQETVEQ I
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027177611.14e-66agamous-like MADS-box protein AGL104
TrEMBLA0A068TZB55e-48A0A068TZB5_COFCA; Uncharacterized protein
STRINGXP_010680585.15e-46(Beta vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA130701416