PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_31800_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 161aa MW: 18499.7 Da PI: 4.6146 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 27.9 | 3.1e-09 | 2 | 28 | 24 | 50 |
HHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 24 AeELSvLCdaevaviifsstgklyeys 50 A+E+ vLCd+++a+i++s++g++ +s cra_locus_31800_iso_1_len_481_ver_3 2 AYEIAVLCDIDIALIMISPSGRISFFS 28 9********************987665 PP | |||||||
2 | K-box | 18.9 | 6.5e-08 | 81 | 158 | 7 | 84 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieel 80 + ++++e +++e+ +L+ ++e+ ++++R l + sl+eL++ e+ L k l+ i ++K+ ll ++ + cra_locus_31800_iso_1_len_481_ver_3 81 PRHLSSHTEGYRKEIINLQHQLEMAKEQLRVLEPDPQRFTSLNELESCEELLSKTLSIIEQRKKTLLNNHASSY 154 44667899**************************************************************9999 PP K-box 81 qkke 84 q+ cra_locus_31800_iso_1_len_481_ver_3 155 QETV 158 8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 10.582 | 1 | 31 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.62E-9 | 2 | 50 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-6 | 2 | 24 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
XAYEIAVLCD IDIALIMISP SGRISFFSGT RRIEDVMLQY FHLSDEEKEL DQDSEGLVND 60 RECVISTLMR LKAEAGVSQS PRHLSSHTEG YRKEIINLQH QLEMAKEQLR VLEPDPQRFT 120 SLNELESCEE LLSKTLSIIE QRKKTLLNNH ASSYQETVEQ I |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027177611.1 | 4e-66 | agamous-like MADS-box protein AGL104 | ||||
TrEMBL | A0A068TZB5 | 5e-48 | A0A068TZB5_COFCA; Uncharacterized protein | ||||
STRING | XP_010680585.1 | 5e-46 | (Beta vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13070 | 14 | 16 |