PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_31527_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 244aa MW: 27225.6 Da PI: 9.9474 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.3 | 5.8e-08 | 140 | 180 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A +Y+k L cra_locus_31527_iso_2_len_839_ver_3 140 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAAHYLKFL 180 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.869 | 131 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.6E-13 | 132 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.34E-9 | 133 | 185 | No hit | No description |
SuperFamily | SSF47459 | 3.66E-14 | 135 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.6E-13 | 137 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-5 | 141 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010500 | Biological Process | transmitting tissue development | ||||
GO:0048462 | Biological Process | carpel formation | ||||
GO:0080126 | Biological Process | ovary septum development | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MAAMPLIDNF SQQCSASAAA QASNYPYNII SSDYSSSSAN LHHHHREIDQ FSSGSATSIE 60 STTTPPPPPL IFSYPPKLMR INNEFGSSSL HQKHRSSMET MREMIFRIAM MQPIQIDPES 120 VKPPKRKNVK ISKDPQSVAA RHRRERISEK IRILQRLVPG GTKMDTASML DEAAHYLKFL 180 KKQVQSLELE QASSNARPNL NHNAAGIPIT MATAATTYSN FIKSCQLPPS HMQMLSXENM 240 GIHX |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027074025.1 | 4e-69 | transcription factor HEC2-like | ||||
Swissprot | Q9SND4 | 5e-44 | HEC2_ARATH; Transcription factor HEC2 | ||||
TrEMBL | A0A1S2YYG3 | 2e-59 | A0A1S2YYG3_CICAR; transcription factor HEC2 | ||||
STRING | XP_004511923.1 | 3e-60 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA752 | 23 | 101 |
Publications ? help Back to Top | |||
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