PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_31378_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 239aa MW: 27428.1 Da PI: 9.6361 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.6 | 1.6e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev v+ifsstgklyeyss cra_locus_31378_iso_3_len_814_ver_3 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVVIFSSTGKLYEYSS 59 8***********************************************96 PP | |||||||
2 | K-box | 84.3 | 2.6e-28 | 81 | 171 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82 + ++ + +q+e+a L+++++nLq+++R+l+Ge+L Ls+++Lq+Le+qLe sl+ iR kK+++l+++i+el + cra_locus_31378_iso_3_len_814_ver_3 81 NPLSEVKFWQREAAILRQQLQNLQENHRQLMGEELYGLSVRDLQNLESQLEMSLRGIRMKKEQILTDEIRELNR 154 4557789******************************************************************* PP K-box 83 kekelqeenkaLrkkle 99 k +++en +L kk++ cra_locus_31378_iso_3_len_814_ver_3 155 KGTLIHQENIELYKKVN 171 *************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.4E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.693 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.01E-45 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 1.05E-32 | 2 | 82 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.8E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.6E-26 | 85 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.398 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVVIFSS TGKLYEYSSS 60 SMKSVMERYN KTKEEKHQLV NPLSEVKFWQ REAAILRQQL QNLQENHRQL MGEELYGLSV 120 RDLQNLESQL EMSLRGIRMK KEQILTDEIR ELNRKGTLIH QENIELYKKV NHIQQENMAL 180 YKKAYNSSTR NTNGTNGDAN STTPYSFTIT GEIGPPIHLQ LCQPDPQNLD TPDGATESR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-20 | 1 | 74 | 1 | 74 | MEF2C |
5f28_B | 2e-20 | 1 | 74 | 1 | 74 | MEF2C |
5f28_C | 2e-20 | 1 | 74 | 1 | 74 | MEF2C |
5f28_D | 2e-20 | 1 | 74 | 1 | 74 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027078102.1 | 1e-133 | MADS-box transcription factor 23-like isoform X1 | ||||
Refseq | XP_027078104.1 | 1e-133 | MADS-box transcription factor 23-like isoform X1 | ||||
Refseq | XP_027078105.1 | 1e-133 | MADS-box transcription factor 23-like isoform X1 | ||||
Refseq | XP_027163492.1 | 1e-133 | MADS-box transcription factor 23-like isoform X1 | ||||
Swissprot | Q6EP49 | 1e-105 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | X5DUQ8 | 1e-131 | X5DUQ8_COFAR; AGL17-1 | ||||
STRING | XP_009786108.1 | 1e-127 | (Nicotiana sylvestris) |
Publications ? help Back to Top | |||
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