PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_31378_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25730.2 Da    PI: 9.5223
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_31378_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.71.5e-281059251
                                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                         ri+n++ rqvtfskRrng+lKKA+EL +LCdaev v+ifsstgklyeyss
  cra_locus_31378_iso_2_len_772_ver_3 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVVIFSSTGKLYEYSS 59
                                         8***********************************************96 PP
2K-box83.54.7e-2881169997
                                K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82 
                                          +  ++ + +q+e+a L+++++nLq+++R+l+Ge+L  Ls+++Lq+Le+qLe sl+ iR kK+++l+++i+el +
  cra_locus_31378_iso_2_len_772_ver_3  81 NPLSEVKFWQREAAILRQQLQNLQENHRQLMGEELYGLSVRDLQNLESQLEMSLRGIRMKKEQILTDEIRELNR 154
                                          4557789******************************************************************* PP

                                K-box  83 kekelqeenkaLrkk 97 
                                          k   +++en +L kk
  cra_locus_31378_iso_2_len_772_ver_3 155 KGTLIHQENIELYKK 169
                                          ************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.4E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.693161IPR002100Transcription factor, MADS-box
CDDcd002654.18E-45278No hitNo description
SuperFamilySSF554559.16E-33282IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003198.0E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-283859IPR002100Transcription factor, MADS-box
PfamPF014869.0E-2685169IPR002487Transcription factor, K-box
PROSITE profilePS5129714.46886177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVVIFSS TGKLYEYSSS  60
SMKSVMERYN KTKEEKHQLV NPLSEVKFWQ REAAILRQQL QNLQENHRQL MGEELYGLSV  120
RDLQNLESQL EMSLRGIRMK KEQILTDEIR ELNRKGTLIH QENIELYKKA YNSSTRNTNG  180
TNGDANSTTP YSFTITGEIG PPIHLQLCQP DPQNLDTPDG ATESR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-20174174MEF2C
5f28_B1e-20174174MEF2C
5f28_C1e-20174174MEF2C
5f28_D1e-20174174MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027078106.11e-127MADS-box transcription factor 23-like isoform X2
RefseqXP_027078107.11e-127MADS-box transcription factor 23-like isoform X2
RefseqXP_027163493.11e-127MADS-box transcription factor 23-like isoform X2
SwissprotQ6EP491e-96MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A068U3501e-125A0A068U350_COFCA; Uncharacterized protein
STRINGXP_009786108.11e-116(Nicotiana sylvestris)
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]