PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3040_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 530aa    MW: 58880 Da    PI: 5.7177
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3040_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.6e-13329373554
                                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                          h e+Er+RR+++N++f  Lr+++P+       +++Ka+ L  Av YI++L
  cra_locus_3040_iso_1_len_1967_ver_3 329 HVEAERQRREKLNQRFCALRSVVPNV-----SRMDKASLLADAVSYINEL 373
                                          899**********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-5116208IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000833.21E-13322378No hitNo description
SuperFamilySSF474592.49E-16324384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.291324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10329373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-16329385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-14330379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MNEFLVKENN DNPLTLQQKL QYVLRSQTDW WSYAIFWQPS NDDHGRLVLG WGDGHFKGTK  60
NDDAPQLLPN NNHLRSPTHH HHQSERKKLM KEIQALIGEN NDNDDDDASL SIDCDVTDAE  120
WFYVMSLARS FSPDDGGVPG RAFSSGSMVW LIGDEQLQLY NCDRAKEAHT HGLQTFVCIP  180
TSSGVLELGS NDLIPQNWSL VRLAKYLFDS LVDDLIIKPP AEPSAPDPAP APAPAPHEKL  240
METLNTNQTS FPDFEFVTEA AAKAISYLDS DNSDSDCMLI NVVDATTTNN HNHNHSVVEV  300
EVEVERKVVV TGKKRGRKPG VRRETPLDHV EAERQRREKL NQRFCALRSV VPNVSRMDKA  360
SLLADAVSYI NELKAKLAEM ERKESSSLSS KGKKVIKAEL SDNHSTTCTT TSVVDQSSTT  420
TTSSGGLRRP GAGFAVEVRI VGEDAMIRVQ SESSNYPAAR LMNALRDLEF KLHHASMSNV  480
DDLMLQDVVI KVPPTAAAAA RGMQCTTENG LKAALLQRLE PERDWRKATS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-32122095193Transcription factor MYC3
4rqw_B2e-32122095193Transcription factor MYC3
4rs9_A2e-32122095193Transcription factor MYC3
4yz6_A2e-32122095193Transcription factor MYC3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022769754.11e-162transcription factor MYC2-like
TrEMBLA0A2U9IXW50.0A0A2U9IXW5_CATRO; Transcription factor MYC2c
STRINGEOX956141e-156(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185