PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_30366_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 180aa MW: 21001.6 Da PI: 9.8178 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.6 | 1.4e-20 | 3 | 57 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k+ ++t++qle Le++F+++ +++ +++ +LAk+lgL+ rq+ vWFqNrRa++k+ cra_locus_30366_iso_1_len_711_ver_3 3 KKKRLTNDQLESLESCFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWKN 57 56679************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 120.7 | 7.5e-39 | 2 | 93 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkee 76 ekk+rl+++q+++LE++F+ee kL+p+rK++la+eLglqprq+avWFqnrRAR+k+kqlE+ y++Lk+++d +++e cra_locus_30366_iso_1_len_711_ver_3 2 EKKKRLTNDQLESLESCFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWKNKQLERLYDSLKQEFDVVSRE 77 69************************************************************************** PP HD-ZIP_I/II 77 nerLekeveeLreelk 92 +++L++ev +Lr+ lk cra_locus_30366_iso_1_len_711_ver_3 78 KQKLQEEVMALRSILK 93 ************8877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 4.1E-18 | 1 | 62 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 17.767 | 1 | 58 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.99E-19 | 3 | 60 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 6.8E-18 | 3 | 57 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.58E-15 | 3 | 59 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-22 | 4 | 65 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 4.7E-6 | 29 | 38 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 33 | 56 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.7E-6 | 38 | 54 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.1E-7 | 58 | 92 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010434 | Biological Process | bract formation | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
XEKKKRLTND QLESLESCFQ EEIKLDPDRK MKLAKELGLQ PRQIAVWFQN RRARWKNKQL 60 ERLYDSLKQE FDVVSREKQK LQEEVMALRS ILKDQVGKNM STTAAAAAXX XXXXXXXQQQ 120 QQQQQMNMNM NMMGQCSSYV FKTNNVNMMN MDQVYNTNAH VMPLYWASAA AAALPSTYPL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 50 | 58 | RRARWKNKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00486 | DAP | Transfer from AT5G03790 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027069703.1 | 1e-59 | putative homeobox-leucine zipper protein ATHB-51 | ||||
Refseq | XP_027173501.1 | 1e-59 | putative homeobox-leucine zipper protein ATHB-51 | ||||
Swissprot | Q9LZR0 | 6e-45 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A068V448 | 4e-58 | A0A068V448_COFCA; Uncharacterized protein | ||||
STRING | XP_009758049.1 | 2e-56 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3869 | 22 | 46 |
Publications ? help Back to Top | |||
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