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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | cra_locus_30340_iso_1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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| Family | bHLH | ||||||||
| Protein Properties | Length: 217aa MW: 23675.2 Da PI: 9.5322 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 38.1 | 2.8e-12 | 14 | 60 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
++h+e+ErrRR+riN +++Lr+llP+ K +Ka+ L ++v+ I++L
cra_locus_30340_iso_1_len_826_ver_3 14 KSHSEAERRRRKRINGHLATLRSLLPNT-----IKSDKASLLAEVVRSIREL 60
79*************************8.....69**************998 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 15.04 | 11 | 60 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 6.67E-9 | 14 | 62 | No hit | No description |
| Pfam | PF00010 | 6.8E-10 | 14 | 60 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 9.2E-13 | 15 | 69 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 1.3E-12 | 15 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 5.9E-10 | 17 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF55021 | 1.31E-5 | 113 | 184 | No hit | No description |
| Gene3D | G3DSA:3.30.70.260 | 1.2E-7 | 114 | 185 | No hit | No description |
| CDD | cd04873 | 0.00245 | 118 | 186 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 217 aa Download sequence Send to blast |
MATAAEAKTI AANKSHSEAE RRRRKRINGH LATLRSLLPN TIKSDKASLL AEVVRSIREL 60 KKTTSELAEN GGDDDDDNDF INMFPSESDE LKLCYIRNDV VGGDSSGSSN SSNTIKATIC 120 CEDRPEIIIE LTRALNSIQT KVVKAEMATV GGRIKAVLWL KMAAAEKVSG EEEGLTKLRR 180 AIKVVIDKSI LLAAPVPIPH AHGHALLGNK RARLYHI |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_027074383.1 | 6e-86 | transcription factor bHLH30-like | ||||
| TrEMBL | A0A068U1R8 | 1e-84 | A0A068U1R8_COFCA; Uncharacterized protein | ||||
| STRING | XP_009605433.1 | 4e-81 | (Nicotiana tomentosiformis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA7283 | 22 | 31 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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