PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_302_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

SBP

Protein Properties

Length: 1076aa MW: 118793 Da PI: 7.5934

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_302_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.8	4.2e-40	154	230	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 +Cqv++C++dls+ak+yhrrhkvCe hska+++lv++++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk cra_locus_302_iso_2_len_3977_ver_3 154 MCQVDNCREDLSHAKDYHRRHKVCELHSKATKALVAKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRK 228 6*************************************************************************9 PP -- CS SBP 76 kq 77 + cra_locus_302_iso_2_len_3977_ver_3 229 TL 230 75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.9E-33	149	216	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.778	152	229	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	9.81E-37	153	232	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.1E-29	155	228	IPR004333	Transcription factor, SBP-box
CDD	cd00204	6.47E-4	872	975	No hit	No description
SuperFamily	SSF48403	5.51E-5	874	977	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042742	Biological Process	defense response to bacterium
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1076 aa Download sequence Send to blast
MEDVSAQIAS PIFIHQHQPF ASRFHEAHVV AKKRSLPFTN NQPPKPFDSW NPKQWEWDST 60 RFIAKPIESD VLRLGTAAEL EAARARKEES NNAANFNKSI HVDEESEDLR LKLGAGGVGA 120 SGGGRIPLNS VEEPVSRPNK RVRSGSPGSA SYPMCQVDNC REDLSHAKDY HRRHKVCELH 180 SKATKALVAK QMQRFCQQCS RFHPLSEFDE GKRSCRRRLA GHNRRRRKTL PEDTTASRLL 240 VPGNRENNGN ADLDIVNFLA ILARAQGNTE DKGANFLSVP DKDQLLQILT KINSLPLPAN 300 LAAKLPVLGS LNRSMSNQVP SENHSPLDVN TRPSTMDLLA VLSTTPASTT QNSLEIQTER 360 SSQGGDSEKT NSSCSIQATC LNLQNMPAFG LPSIGGERSS SSQQSPIEDS DGHVEEMHAN 420 IPLQLFSSSP EDNCRPKLPA SRKYFSSGSS NPSVDPSPSS SPPVVQKLFP IYSARETLES 480 GSRANSGEDV VNSRAIQHSG CNTSLQLFGN STMGTGVGLI QNFPYQTGYT SSSGSDHSPS 540 SLNSDPQDRT GRIIFKLFDK DPSHLPGSLR SQIYNWLLKS PSEMESYIRP GCVVLSVYLS 600 MPSSSWEQFE ANLLQYVKSL TKDFNTEFWS NGRFLVCTGK QLALRVDGKL RLFKPRKAWT 660 SPELISVSPL AVVGGQETSV LLRGRNLITS EAKINCSHTA DYTVKEVSGL ACEESEYDEI 720 NLCNFKVCTS SSSILGRCFI EVENGLRGTS FPVIIADKAI CQELRVLEHD ISDESKTEED 780 VLADHLQDSG RPRSRAEILH FLNELGWLFQ RKCNSTLLQG PDYRISRFKF LLIFSVEHDF 840 CALVKGLLDI LVEINLGREG LEIESLEMLS QIHLLNRAVK RRCKKMIDLL INYSIADSSN 900 LTKRYIFPPN LVGPGGITPL HLAACSSGLD DIVDSLTSDA QEIGLHCWNS LLDANGLSPH 960 AYAEMRNNHS YNRLVAQKLA DKRNGQVSVS IGNEIEPLWL NVNPQTRAAT HFKPDQGSCS 1020 KCAAASMRYN WRNPVSQGLL HRPYIHSMLA IAAVCVCVCL FLRGAPDIGS VAPFAW

Sequence ? help Back to Top

Protein Sequence Length: 1076 aa Download sequence Send to blast

MEDVSAQIAS PIFIHQHQPF ASRFHEAHVV AKKRSLPFTN NQPPKPFDSW NPKQWEWDST  60
RFIAKPIESD VLRLGTAAEL EAARARKEES NNAANFNKSI HVDEESEDLR LKLGAGGVGA  120
SGGGRIPLNS VEEPVSRPNK RVRSGSPGSA SYPMCQVDNC REDLSHAKDY HRRHKVCELH  180
SKATKALVAK QMQRFCQQCS RFHPLSEFDE GKRSCRRRLA GHNRRRRKTL PEDTTASRLL  240
VPGNRENNGN ADLDIVNFLA ILARAQGNTE DKGANFLSVP DKDQLLQILT KINSLPLPAN  300
LAAKLPVLGS LNRSMSNQVP SENHSPLDVN TRPSTMDLLA VLSTTPASTT QNSLEIQTER  360
SSQGGDSEKT NSSCSIQATC LNLQNMPAFG LPSIGGERSS SSQQSPIEDS DGHVEEMHAN  420
IPLQLFSSSP EDNCRPKLPA SRKYFSSGSS NPSVDPSPSS SPPVVQKLFP IYSARETLES  480
GSRANSGEDV VNSRAIQHSG CNTSLQLFGN STMGTGVGLI QNFPYQTGYT SSSGSDHSPS  540
SLNSDPQDRT GRIIFKLFDK DPSHLPGSLR SQIYNWLLKS PSEMESYIRP GCVVLSVYLS  600
MPSSSWEQFE ANLLQYVKSL TKDFNTEFWS NGRFLVCTGK QLALRVDGKL RLFKPRKAWT  660
SPELISVSPL AVVGGQETSV LLRGRNLITS EAKINCSHTA DYTVKEVSGL ACEESEYDEI  720
NLCNFKVCTS SSSILGRCFI EVENGLRGTS FPVIIADKAI CQELRVLEHD ISDESKTEED  780
VLADHLQDSG RPRSRAEILH FLNELGWLFQ RKCNSTLLQG PDYRISRFKF LLIFSVEHDF  840
CALVKGLLDI LVEINLGREG LEIESLEMLS QIHLLNRAVK RRCKKMIDLL INYSIADSSN  900
LTKRYIFPPN LVGPGGITPL HLAACSSGLD DIVDSLTSDA QEIGLHCWNS LLDANGLSPH  960
AYAEMRNNHS YNRLVAQKLA DKRNGQVSVS IGNEIEPLWL NVNPQTRAAT HFKPDQGSCS  1020
KCAAASMRYN WRNPVSQGLL HRPYIHSMLA IAAVCVCVCL FLRGAPDIGS VAPFAW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-31	145	228	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	876	881	RAVKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269\|PubMed:15703061}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00155	DAP	Transfer from AT1G20980	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027148207.1	0.0	squamosa promoter-binding-like protein 14
Swissprot	Q8RY95	0.0	SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBL	A0A068UG60	0.0	A0A068UG60_COFCA; Uncharacterized protein
STRING	VIT_18s0122g00380.t01	0.0	(Vitis vinifera)

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Liu J, et al. Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.). Front Plant Sci, 2016. 7: p. 21 [PMID:26870051]