PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_30222_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HD-ZIP
Protein Properties Length: 142aa    MW: 15613.6 Da    PI: 9.0628
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_30222_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.83.8e-0815314056
                                         -HHHHHHHHHHHHHHHH CS
                             Homeobox 40 terqVkvWFqNrRakek 56
                                         + rqV vWFqNrRa+ k
  cra_locus_30222_iso_3_len_711_ver_3 15 SPRQVEVWFQNRRARTK 31
                                         689************98 PP
2HD-ZIP_I/II811.8e-2610673492
                          HD-ZIP_I/II 34 reLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
                                         ++++ +prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  cra_locus_30222_iso_3_len_711_ver_3 10 KAVESSPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 67
                                         667779************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.993133IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.7E-71131IPR009057Homeodomain-like
SuperFamilySSF466893.55E-71242IPR009057Homeodomain-like
CDDcd000864.34E-41534No hitNo description
PfamPF000461.5E-51531IPR001356Homeobox domain
PfamPF021831.9E-113367IPR003106Leucine zipper, homeobox-associated
SMARTSM003407.8E-263376IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MAETEISFGK AVESSPRQVE VWFQNRRART KLKQTEVDCE YLKRCCETLT EENRRLQKEL  60
QELRALKSSQ PFYMQLPPTT LTMCPSCERV ASSTAANANA NANANANAKA NATATAAATT  120
NTALSLSKPK PQPQPQHQVA AS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12533RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027066527.15e-56homeobox-leucine zipper protein HOX11
SwissprotP466654e-48HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A068URD41e-54A0A068URD4_COFCA; Uncharacterized protein
STRINGXP_010672636.16e-52(Beta vulgaris)