PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_30222_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 149aa MW: 16604.7 Da PI: 10.4352 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 41.5 | 2.3e-13 | 3 | 38 | 21 | 56 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++ +++ LAk+l+L rqV vWFqNrRa+ k cra_locus_30222_iso_2_len_627_ver_3 3 EHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 38 57899*****************************98 PP | |||||||
2 | HD-ZIP_I/II | 104.2 | 1e-33 | 2 | 74 | 19 | 92 |
HD-ZIP_I/II 19 eeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk cra_locus_30222_iso_2_len_627_ver_3 2 KEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 74 6899*****************************************************************9.555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 13.281 | 1 | 40 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.95E-8 | 2 | 41 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-12 | 3 | 38 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.99E-12 | 3 | 49 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 8.0E-11 | 3 | 38 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 15 | 38 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 2.1E-11 | 40 | 74 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 7.8E-26 | 40 | 83 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 149 aa Download sequence Send to blast |
XKEHNTLNPK QKLALAKQLN LRPRQVEVWF QNRRARTKLK QTEVDCEYLK RCCETLTEEN 60 RRLQKELQEL RALKSSQPFY MQLPPTTLTM CPSCERVASS TAANANANAN ANANAKANAT 120 ATAAATTNTA LSLSKPKPQP QPQHQVAAS |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 32 | 40 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027066527.1 | 2e-71 | homeobox-leucine zipper protein HOX11 | ||||
Swissprot | P46665 | 6e-62 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | A0A068URD4 | 4e-70 | A0A068URD4_COFCA; Uncharacterized protein | ||||
STRING | XP_010265939.1 | 7e-67 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |