PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3002_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bZIP
Protein Properties Length: 433aa    MW: 47161.3 Da    PI: 6.5623
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3002_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.73.3e-10229286562
                                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                                          kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  l+     l++e
  cra_locus_3002_iso_4_len_1895_ver_3 229 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAE 286
                                          9********************************************9999887777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.9E-15225289IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.749227290IPR004827Basic-leucine zipper domain
PfamPF001707.0E-9229281IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.26E-11229283No hitNo description
Gene3DG3DSA:1.20.5.1706.9E-11229283No hitNo description
CDDcd147031.28E-25230279No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009658Biological Processchloroplast organization
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0042026Biological Processprotein refolding
GO:0005739Cellular Componentmitochondrion
GO:0009570Cellular Componentchloroplast stroma
GO:0009579Cellular Componentthylakoid
GO:0009941Cellular Componentchloroplast envelope
GO:0016020Cellular Componentmembrane
GO:0022626Cellular Componentcytosolic ribosome
GO:0048046Cellular Componentapoplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005524Molecular FunctionATP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MDKEKAVNQS GGLPPSGGRY SVFSSPGSGY GLKSEPSGSS SFPPLAPGGT SESGHFGHGM  60
PSESNRFSHD ISQMPDNPPK NLGHRRAHSE ILTLPDDISF DSDLGVVGGL DGPAFSDDTE  120
EDLLSMYLDM DKFNSSSATS GIKLGESSSA AVSCSPPKPA SSSVVAAGDS LSSVSEKPRV  180
RHQHSQSMDG STTIKPEMLT SGTEEPSPAD SKKAISAAKL AELALIDPKR AKRIWANRQS  240
AARSKERKMR YIAELERKVQ TLQTEATSLS AQLTLLQRDT NGLTAENGEL KLRLQTMEQQ  300
VHLQDALNDA LKEEIQHLKV LTGQMPNGGP MMNFPQSFGA NQQYYSGNHA MHTMLTAQQF  360
QQLQINTQKQ QHQFQQHQLH QFQQHQLQHQ QPQSLMQQQE QLVQQTGELK LRGPVQSHAQ  420
NDNPDMGASS SKD
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027117495.10.0probable transcription factor PosF21
RefseqXP_027117496.10.0probable transcription factor PosF21
RefseqXP_027117497.10.0probable transcription factor PosF21
SwissprotQ040881e-147POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A068VB620.0A0A068VB62_COFCA; Uncharacterized protein
STRINGXP_008222595.10.0(Prunus mume)
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]