PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_28900_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

AP2

Protein Properties

Length: 137aa MW: 15321.8 Da PI: 8.0444

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_28900_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	45.7	1.7e-14	26	76	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+++ eAa+a+++a++k +g cra_locus_28900_iso_1_len_408_ver_3 26 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDKAALKCNG 76 89******.7**...5...334336******99********99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	8.63E-28	26	86	No hit	No description
SuperFamily	SSF54171	8.5E-18	26	86	IPR016177	DNA-binding domain
Pfam	PF00847	3.8E-10	26	76	IPR001471	AP2/ERF domain
SMART	SM00380	5.7E-32	27	90	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.1E-16	27	84	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	15.58	27	84	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.9E-7	28	39	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.9E-7	66	86	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
XMKNLTKEEF VHILRRQSTG FSRGSSKYRG VTLHKCGRWE ARMGQLLGKK YIYLGLFDSE 60 IEAARAYDKA ALKCNGREAV TNFDPSLYEG ELISEEDNSG RKDGLNLNLG IAPPNLAVEE 120 NKNMNTGGFE FQCGSNX

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250\|UniProtKB:P47927, ECO:0000269\|PubMed:17144896, ECO:0000269\|PubMed:22003982, ECO:0000269\|PubMed:28066457, ECO:0000305\|PubMed:26631749}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269\|PubMed:20017947, ECO:0000269\|PubMed:22003982, ECO:0000305\|PubMed:26631749, ECO:0000305\|PubMed:28066457}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007027220.1	2e-69	PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X2
Refseq	XP_024186594.1	8e-70	floral homeotic protein APETALA 2-like isoform X3
Swissprot	Q8H443	3e-61	AP23_ORYSJ; APETALA2-like protein 3
TrEMBL	A0A061ETL4	4e-68	A0A061ETL4_THECC; AP2.7 isoform 1
TrEMBL	A0A2P6RAH9	2e-68	A0A2P6RAH9_ROSCH; Putative transcription factor AP2-EREBP family
STRING	EOY07722	7e-69	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA591	24	116

Publications ? help Back to Top
Lee DY,An G Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice. Plant J., 2012. 69(3): p. 445-61 [PMID:22003982] Wang L, et al. Coordinated regulation of vegetative and reproductive branching in rice. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9 [PMID:26631749] Dai Z,Wang J,Zhu M,Miao X,Shi Z OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice. Front Plant Sci, 2016. 7: p. 1891 [PMID:28066457]