PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_28899_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family AP2
Protein Properties Length: 124aa    MW: 14075.6 Da    PI: 9.9921
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_28899_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.8e-1857106155
                                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                          s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  cra_locus_28899_iso_1_len_372_ver_3  57 SQYRGVTFYRRTGRWESHIWD------NgKQVYLGGFDTAHAAARAYDRAAIKFRG 106
                                          78*******************......44************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-1857116IPR016177DNA-binding domain
PfamPF008472.0E-1157106IPR001471AP2/ERF domain
CDDcd000181.25E-1257116No hitNo description
PROSITE profilePS5103218.20258114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-1858115IPR001471AP2/ERF domain
SMARTSM003803.9E-3158120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
EFFPVNAGQE SPASAVQKER LLDLSGTVGS PVEQMIVAQQ HRQRVKKSRR GPISRSSQYR  60
GVTFYRRTGR WESHIWDNGK QVYLGGFDTA HAAARAYDRA AIKFRGLDAD INFNVSDYED  120
DLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016502850.13e-56PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X1
RefseqXP_016502851.12e-56PREDICTED: floral homeotic protein APETALA 2-like isoform X2
RefseqXP_018630941.13e-56PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X1
RefseqXP_018630942.12e-56PREDICTED: floral homeotic protein APETALA 2-like isoform X2
SwissprotQ9LVG21e-37TOE2_ARATH; AP2-like ethylene-responsive transcription factor TOE2
TrEMBLA0A1S4CP607e-55A0A1S4CP60_TOBAC; AP2-like ethylene-responsive transcription factor TOE3 isoform X1
TrEMBLA0A1S4CP724e-55A0A1S4CP72_TOBAC; floral homeotic protein APETALA 2-like isoform X2
STRINGXP_009606014.11e-46(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116