PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2886_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bZIP

Protein Properties

Length: 464aa MW: 49089.6 Da PI: 9.9736

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2886_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.2	2.4e-15	377	428	5	56
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++eN++L+k+ e+ ++ cra_locus_2886_iso_3_len_2287_ver_3 377 RRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENQELRKKQAEIIEMQ 428 79****************************************9987776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-14	373	439	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.461	375	424	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.1E-15	377	424	No hit	No description
CDD	cd14707	1.50E-26	377	431	No hit	No description
SuperFamily	SSF57959	8.13E-11	377	425	No hit	No description
Pfam	PF00170	5.1E-13	377	429	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	380	395	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0010255	Biological Process	glucose mediated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MDGGGGGSAG GRPPGNYPLT RQPSVYSLTF EEFQNTIGGS GKDFGSMNMD ELLKNIWSAE 60 EIQSIGSATT AVQDGGASGG YLQRQGSLTL PRTLSQKTVD EVWKDISKEF IGTAGGGKDG 120 SAVGGSSVAQ TQRQQTLGEV TLEEFLVRAG VVREEAQLAA RPNTAGLFAD FSRTGNNQGL 180 GFANQQPGRN TGYMGGRILE SSNQIAAESA NLPLNXKWGK IYPAEVRDTT NTAASTTPGA 240 AAPAPAQHQH QHQQQPIFPK QPTLAYGAPM GIPNGAQMAI PNGAQLGSPS LRGGIVGISD 300 PITNGNLVQN AALQGGGMGM VGLGAGGVTV AAGSPAVSSD GLGKSNGDAS SVSPVPYVFN 360 GGLRGRKCSA LEKVVERRQR RMIKNRESAA RSRARKQAYT MELEAEVAKL KEENQELRKK 420 QAEIIEMQKN QAMEMMNMQL GGKRRCLRRT QTGPWXREHR MLEP

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MDGGGGGSAG GRPPGNYPLT RQPSVYSLTF EEFQNTIGGS GKDFGSMNMD ELLKNIWSAE  60
EIQSIGSATT AVQDGGASGG YLQRQGSLTL PRTLSQKTVD EVWKDISKEF IGTAGGGKDG  120
SAVGGSSVAQ TQRQQTLGEV TLEEFLVRAG VVREEAQLAA RPNTAGLFAD FSRTGNNQGL  180
GFANQQPGRN TGYMGGRILE SSNQIAAESA NLPLNXKWGK IYPAEVRDTT NTAASTTPGA  240
AAPAPAQHQH QHQQQPIFPK QPTLAYGAPM GIPNGAQMAI PNGAQLGSPS LRGGIVGISD  300
PITNGNLVQN AALQGGGMGM VGLGAGGVTV AAGSPAVSSD GLGKSNGDAS SVSPVPYVFN  360
GGLRGRKCSA LEKVVERRQR RMIKNRESAA RSRARKQAYT MELEAEVAKL KEENQELRKK  420
QAEIIEMQKN QAMEMMNMQL GGKRRCLRRT QTGPWXREHR MLEP

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00186	DAP	Transfer from AT1G45249	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027091459.1	0.0	bZIP transcription factor 46-like
Refseq	XP_027091460.1	0.0	bZIP transcription factor 46-like
Swissprot	Q9M7Q4	1e-127	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	A0A1U8GBR9	0.0	A0A1U8GBR9_CAPAN; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	A0A1U8GJ68	0.0	A0A1U8GJ68_CAPAN; ABSCISIC ACID-INSENSITIVE 5-like protein 5
STRING	Solyc04g078840.2.1	1e-179	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA776	24	97

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]