PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2881_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

FAR1

Protein Properties

Length: 813aa MW: 93150.5 Da PI: 7.9981

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2881_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.5	8.4e-27	155	263	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtra 56 +fY+eYAk++GFs +++s++s+ +g++++++fvCs++gk++e+ + +++ r +r+ cra_locus_2881_iso_3_len_2842_ver_3 155 SFYKEYAKSIGFSAIIKASRRSRISGKFIDAKFVCSRYGKKNESARLetpdslpgadgtmnistkKKRGRINRS 228 5***************************************9998899*********987777788* PP FAR1 57 etrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++t+Cka+++vkk+++g+w + +l +eHnHe++p cra_locus_2881_iso_3_len_2842_ver_3 229 WSKTDCKACMHVKKRQEGRWTICNLIKEHNHEIFP 263 ********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-24	155	263	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.2E-27	378	470	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.262	657	693	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.3E-8	664	691	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.1E-7	668	695	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 813 aa Download sequence Send to blast
XAGGERVLSS ASNTVHQSCP NXRTEDTQPP NLTCFVHFSA AIFNSPLLHL YAIKNLGKKH 60 KISLPMGVDL EDPSCELSKD KEEDRSVANR GIEHAESGLC NKDSSMLSGY NKDDVGRTKT 120 AKQNSFDGAV MNMYSLRELE PHDRMEFESK EDALSFYKEY AKSIGFSAII KASRRSRISG 180 KFIDAKFVCS RYGKKNESAR LETPDSLPGA DGTMNISTKK KRGRINRSWS KTDCKACMHV 240 KKRQEGRWTI CNLIKEHNHE IFPDQACCFR DHRNADIGCS NIDRLDATHS RTKKMYMSSQ 300 TGLPMKVQNK KDGSMDTSGL HSALEEGDAQ LMLEYFSHMQ DENPNFFYAI DLNEEQRLRN 360 VFWVDAKGRL DYANFSDVVF LDTTYVKSEY KLPFVPFIGV NHHFQFVLLG CAMIGDESKS 420 TYVWLMQTWL RVMKQAPKVI LTDQDEVLKE TIAEVLKDSR HCFCLWHILS KIQEKLGYVI 480 TQHENFTTKF GKCILKSVSE EQFEKRWSKL VDGFDLRNDS WVQATYEDRF QWVPTYMKHI 540 FLAGMSTMQR LESLTSLFDK YMQRKTTLKE FFDQYKSMLK EKYEDEAKAD FETWHKKPGL 600 KSPSPFGKQM AALYTHAIFK KFQVEVLGVV ACHPKKESED GPNTKFKVQD FEENQDFIVV 660 WNDTIADASC SCQLFEYNGF LCRHIMIVLQ MFGIHNIPNK YILKRWTKNA KNREVIRTTG 720 LVKSPVERYN DICRRVLKLG DEASLSLETY NIAFNALKDA LRKCESLNCS IQYIAESSSP 780 SDHGLPEFEE VSAGGSTNKV TRGTNVSGNG EVN

Sequence ? help Back to Top

Protein Sequence Length: 813 aa Download sequence Send to blast

XAGGERVLSS ASNTVHQSCP NXRTEDTQPP NLTCFVHFSA AIFNSPLLHL YAIKNLGKKH  60
KISLPMGVDL EDPSCELSKD KEEDRSVANR GIEHAESGLC NKDSSMLSGY NKDDVGRTKT  120
AKQNSFDGAV MNMYSLRELE PHDRMEFESK EDALSFYKEY AKSIGFSAII KASRRSRISG  180
KFIDAKFVCS RYGKKNESAR LETPDSLPGA DGTMNISTKK KRGRINRSWS KTDCKACMHV  240
KKRQEGRWTI CNLIKEHNHE IFPDQACCFR DHRNADIGCS NIDRLDATHS RTKKMYMSSQ  300
TGLPMKVQNK KDGSMDTSGL HSALEEGDAQ LMLEYFSHMQ DENPNFFYAI DLNEEQRLRN  360
VFWVDAKGRL DYANFSDVVF LDTTYVKSEY KLPFVPFIGV NHHFQFVLLG CAMIGDESKS  420
TYVWLMQTWL RVMKQAPKVI LTDQDEVLKE TIAEVLKDSR HCFCLWHILS KIQEKLGYVI  480
TQHENFTTKF GKCILKSVSE EQFEKRWSKL VDGFDLRNDS WVQATYEDRF QWVPTYMKHI  540
FLAGMSTMQR LESLTSLFDK YMQRKTTLKE FFDQYKSMLK EKYEDEAKAD FETWHKKPGL  600
KSPSPFGKQM AALYTHAIFK KFQVEVLGVV ACHPKKESED GPNTKFKVQD FEENQDFIVV  660
WNDTIADASC SCQLFEYNGF LCRHIMIVLQ MFGIHNIPNK YILKRWTKNA KNREVIRTTG  720
LVKSPVERYN DICRRVLKLG DEASLSLETY NIAFNALKDA LRKCESLNCS IQYIAESSSP  780
SDHGLPEFEE VSAGGSTNKV TRGTNVSGNG EVN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028055460.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	F6HF67	0.0	F6HF67_VITVI; Uncharacterized protein
STRING	VIT_01s0011g01470.t01	0.0	(Vitis vinifera)

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]