PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_2881_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | FAR1 | ||||||||
Protein Properties | Length: 838aa MW: 95985.6 Da PI: 7.9151 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.4 | 8.7e-27 | 155 | 263 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtra 56 +fY+eYAk++GFs +++s++s+ +g++++++fvCs++gk++e+ + +++ r +r+ cra_locus_2881_iso_2_len_2741_ver_3 155 SFYKEYAKSIGFSAIIKASRRSRISGKFIDAKFVCSRYGKKNESARLetpdslpgadgtmnistkKKRGRINRS 228 5*****************************************9998899*************987777788*** PP FAR1 57 etrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++t+Cka+++vkk+++g+w + +l +eHnHe++p cra_locus_2881_iso_2_len_2741_ver_3 229 WSKTDCKACMHVKKRQEGRWTICNLIKEHNHEIFP 263 ********************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.6E-24 | 155 | 263 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 8.5E-27 | 378 | 470 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.262 | 657 | 693 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 5.4E-8 | 664 | 691 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 5.1E-7 | 668 | 695 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 838 aa Download sequence Send to blast |
XAGGERVLSS ASNTVHQSCP NXRTEDTQPP NLTCFVHFSA AIFNSPLLHL YAIKNLGKKH 60 KISLPMGVDL EDPSCELSKD KEEDRSVANR GIEHAESGLC NKDSSMLSGY NKDDVGRTKT 120 AKQNSFDGAV MNMYSLRELE PHDRMEFESK EDALSFYKEY AKSIGFSAII KASRRSRISG 180 KFIDAKFVCS RYGKKNESAR LETPDSLPGA DGTMNISTKK KRGRINRSWS KTDCKACMHV 240 KKRQEGRWTI CNLIKEHNHE IFPDQACCFR DHRNADIGCS NIDRLDATHS RTKKMYMSSQ 300 TGLPMKVQNK KDGSMDTSGL HSALEEGDAQ LMLEYFSHMQ DENPNFFYAI DLNEEQRLRN 360 VFWVDAKGRL DYANFSDVVF LDTTYVKSEY KLPFVPFIGV NHHFQFVLLG CAMIGDESKS 420 TYVWLMQTWL RVMKQAPKVI LTDQDEVLKE TIAEVLKDSR HCFCLWHILS KIQEKLGYVI 480 TQHENFTTKF GKCILKSVSE EQFEKRWSKL VDGFDLRNDS WVQATYEDRF QWVPTYMKHI 540 FLAGMSTMQR LESLTSLFDK YMQRKTTLKE FFDQYKSMLK EKYEDEAKAD FETWHKKPGL 600 KSPSPFGKQM AALYTHAIFK KFQVEVLGVV ACHPKKESED GPNTKFKVQD FEENQDFIVV 660 WNDTIADASC SCQLFEYNGF LCRHIMIVLQ MFGIHNIPNK YILKRWTKNA KNREVIRTTG 720 LVKSPVERYN DICRRVLKLG DEASLSLETY NIAFNALKDA LRKCESLNCS IQYIAESSSP 780 SDHGLPEFEE VSAGGSTNKV TRGTNVSGNG ETQPEHEVVT AGMNSNWQRM VGYISALF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269|PubMed:18033885}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028055460.1 | 0.0 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
Swissprot | Q9SWG3 | 0.0 | FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1 | ||||
TrEMBL | F6HF67 | 0.0 | F6HF67_VITVI; Uncharacterized protein | ||||
STRING | VIT_01s0011g01470.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA496 | 21 | 103 |