PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2881_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

FAR1

Protein Properties

Length: 788aa MW: 90665.4 Da PI: 8.0702

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2881_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.5	8e-27	130	238	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtra 56 +fY+eYAk++GFs +++s++s+ +g++++++fvCs++gk++e+ + +++ r +r+ cra_locus_2881_iso_1_len_2768_ver_3 130 SFYKEYAKSIGFSAIIKASRRSRISGKFIDAKFVCSRYGKKNESARLetpdslpgadgtmnistkKKRGRINRS 203 5***************************************9998899*********987777788* PP FAR1 57 etrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++t+Cka+++vkk+++g+w + +l +eHnHe++p cra_locus_2881_iso_1_len_2768_ver_3 204 WSKTDCKACMHVKKRQEGRWTICNLIKEHNHEIFP 238 ********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-24	130	238	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.8E-27	353	445	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.262	632	668	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.1E-8	639	666	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.1E-7	643	670	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 788 aa Download sequence Send to blast
CCLYFILFGF LTLSLAVAYY WVPSQYAIKN LGKKHKISLP MGVDLEDPSC ELSKDKEEDR 60 SVANRGIEHA ESGLCNKDSS MLSGYNKDDV GRTKTAKQNS FDGAVMNMYS LRELEPHDRM 120 EFESKEDALS FYKEYAKSIG FSAIIKASRR SRISGKFIDA KFVCSRYGKK NESARLETPD 180 SLPGADGTMN ISTKKKRGRI NRSWSKTDCK ACMHVKKRQE GRWTICNLIK EHNHEIFPDQ 240 ACCFRDHRNA DIGCSNIDRL DATHSRTKKM YMSSQTGLPM KVQNKKDGSM DTSGLHSALE 300 EGDAQLMLEY FSHMQDENPN FFYAIDLNEE QRLRNVFWVD AKGRLDYANF SDVVFLDTTY 360 VKSEYKLPFV PFIGVNHHFQ FVLLGCAMIG DESKSTYVWL MQTWLRVMKQ APKVILTDQD 420 EVLKETIAEV LKDSRHCFCL WHILSKIQEK LGYVITQHEN FTTKFGKCIL KSVSEEQFEK 480 RWSKLVDGFD LRNDSWVQAT YEDRFQWVPT YMKHIFLAGM STMQRLESLT SLFDKYMQRK 540 TTLKEFFDQY KSMLKEKYED EAKADFETWH KKPGLKSPSP FGKQMAALYT HAIFKKFQVE 600 VLGVVACHPK KESEDGPNTK FKVQDFEENQ DFIVVWNDTI ADASCSCQLF EYNGFLCRHI 660 MIVLQMFGIH NIPNKYILKR WTKNAKNREV IRTTGLVKSP VERYNDICRR VLKLGDEASL 720 SLETYNIAFN ALKDALRKCE SLNCSIQYIA ESSSPSDHGL PEFEEVSAGG STNKVTRGTN 780 VSGNGEVN

Sequence ? help Back to Top

Protein Sequence Length: 788 aa Download sequence Send to blast

CCLYFILFGF LTLSLAVAYY WVPSQYAIKN LGKKHKISLP MGVDLEDPSC ELSKDKEEDR  60
SVANRGIEHA ESGLCNKDSS MLSGYNKDDV GRTKTAKQNS FDGAVMNMYS LRELEPHDRM  120
EFESKEDALS FYKEYAKSIG FSAIIKASRR SRISGKFIDA KFVCSRYGKK NESARLETPD  180
SLPGADGTMN ISTKKKRGRI NRSWSKTDCK ACMHVKKRQE GRWTICNLIK EHNHEIFPDQ  240
ACCFRDHRNA DIGCSNIDRL DATHSRTKKM YMSSQTGLPM KVQNKKDGSM DTSGLHSALE  300
EGDAQLMLEY FSHMQDENPN FFYAIDLNEE QRLRNVFWVD AKGRLDYANF SDVVFLDTTY  360
VKSEYKLPFV PFIGVNHHFQ FVLLGCAMIG DESKSTYVWL MQTWLRVMKQ APKVILTDQD  420
EVLKETIAEV LKDSRHCFCL WHILSKIQEK LGYVITQHEN FTTKFGKCIL KSVSEEQFEK  480
RWSKLVDGFD LRNDSWVQAT YEDRFQWVPT YMKHIFLAGM STMQRLESLT SLFDKYMQRK  540
TTLKEFFDQY KSMLKEKYED EAKADFETWH KKPGLKSPSP FGKQMAALYT HAIFKKFQVE  600
VLGVVACHPK KESEDGPNTK FKVQDFEENQ DFIVVWNDTI ADASCSCQLF EYNGFLCRHI  660
MIVLQMFGIH NIPNKYILKR WTKNAKNREV IRTTGLVKSP VERYNDICRR VLKLGDEASL  720
SLETYNIAFN ALKDALRKCE SLNCSIQYIA ESSSPSDHGL PEFEEVSAGG STNKVTRGTN  780
VSGNGEVN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028055460.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	F6HF67	0.0	F6HF67_VITVI; Uncharacterized protein
STRING	VIT_01s0011g01470.t01	0.0	(Vitis vinifera)

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]