PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2845_iso_6
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 302aa    MW: 34252 Da    PI: 4.4606
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2845_iso_6genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.22.2e-11214259555
                                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                          h ++Er+RR+ + ++f  L +l+P +     kK++K ++L  A++Y+k+Lq
  cra_locus_2845_iso_6_len_1071_ver_3 214 HIIAERKRREILSQRFMALSTLVPGL-----KKMDKTSVLGDAIKYLKYLQ 259
                                          899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.716209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-16210274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-15214273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-9214259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.99E-13214263No hitNo description
SMARTSM003531.1E-12215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MTDNSGISNW FTELGMEDPN NFLMINNDDE CDVMEFLNED ICAATVGQDY YFQISPTFSL  60
NTTSTLYPSS SSTPMDILDQ SPPFMLDDDI DETMNRRPAK QLKSTSNNNQ NNQNPSTIHD  120
SFDAQMSTPY LLTFGNPNSP EIINPPHHQQ HHQPNATLNL NPSDEDVQVS EVFNSQSSSY  180
GNLIEEEAAA PKSSKPTSKK SGGRVRPASQ TYDHIIAERK RREILSQRFM ALSTLVPGLK  240
KMDKTSVLGD AIKYLKYLQE RVQILEDQAA KQTMESVVMV KKSHVFIQEE EEEEDDIRRI  300
FR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217222ERKRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0M3LQV61e-152A0A0M3LQV6_CATRO; BHLH iridoid synthesis 2