PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2845_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 401aa MW: 44919.3 Da PI: 4.4167

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2845_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.6	3.3e-11	214	259	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+ + ++f L +l+P + kK++K ++L A++Y+k+Lq cra_locus_2845_iso_5_len_1555_ver_3 214 HIIAERKRREILSQRFMALSTLVPGL-----KKMDKTSVLGDAIKYLKYLQ 259 899*********************.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.716	209	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.79E-16	210	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.7E-9	214	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-15	214	273	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.44E-12	214	263	No hit	No description
SMART	SM00353	1.1E-12	215	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MTDNSGISNW FTELGMEDPN NFLMINNDDE CDVMEFLNED ICAATVGQDY YFQISPTFSL 60 NTTSTLYPSS SSTPMDILDQ SPPFMLDDDI DETMNRRPAK QLKSTSNNNQ NNQNPSTIHD 120 SFDAQMSTPY LLTFGNPNSP EIINPPHHQQ HHQPNATLNL NPSDEDVQVS EVFNSQSSSY 180 GNLIEEEAAA PKSSKPTSKK SGGRVRPASQ TYDHIIAERK RREILSQRFM ALSTLVPGLK 240 KMDKTSVLGD AIKYLKYLQE RVQILEDQAA KQTMESVVMV KKSHVFIQEE EDDEEGSSDD 300 QITSDGGSSE EHPLPEIEVK VCNKTLLLRI HCEKQKGVLI KLLNEIERLN LGVTNINVAP 360 FGSLALDITI IAEMEKEYNM TTVQVIKNLR SVLLNSPPMA D

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MTDNSGISNW FTELGMEDPN NFLMINNDDE CDVMEFLNED ICAATVGQDY YFQISPTFSL  60
NTTSTLYPSS SSTPMDILDQ SPPFMLDDDI DETMNRRPAK QLKSTSNNNQ NNQNPSTIHD  120
SFDAQMSTPY LLTFGNPNSP EIINPPHHQQ HHQPNATLNL NPSDEDVQVS EVFNSQSSSY  180
GNLIEEEAAA PKSSKPTSKK SGGRVRPASQ TYDHIIAERK RREILSQRFM ALSTLVPGLK  240
KMDKTSVLGD AIKYLKYLQE RVQILEDQAA KQTMESVVMV KKSHVFIQEE EDDEEGSSDD  300
QITSDGGSSE EHPLPEIEVK VCNKTLLLRI HCEKQKGVLI KLLNEIERLN LGVTNINVAP  360
FGSLALDITI IAEMEKEYNM TTVQVIKNLR SVLLNSPPMA D

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	217	222	ERKRRE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027107757.1	1e-107	transcription factor bHLH18-like
TrEMBL	A0A0M3LQV6	0.0	A0A0M3LQV6_CATRO; BHLH iridoid synthesis 2

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1760	24	61