PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_2845_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 367aa MW: 41368.4 Da PI: 4.44 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.8 | 2.9e-11 | 214 | 259 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+ + ++f L +l+P + kK++K ++L A++Y+k+Lq cra_locus_2845_iso_3_len_1444_ver_3 214 HIIAERKRREILSQRFMALSTLVPGL-----KKMDKTSVLGDAIKYLKYLQ 259 899***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.716 | 209 | 258 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.27E-16 | 210 | 274 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-15 | 214 | 273 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.07E-12 | 214 | 263 | No hit | No description |
Pfam | PF00010 | 6.8E-9 | 214 | 259 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-12 | 215 | 264 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MTDNSGISNW FTELGMEDPN NFLMINNDDE CDVMEFLNED ICAATVGQDY YFQISPTFSL 60 NTTSTLYPSS SSTPMDILDQ SPPFMLDDDI DETMNRRPAK QLKSTSNNNQ NNQNPSTIHD 120 SFDAQMSTPY LLTFGNPNSP EIINPPHHQQ HHQPNATLNL NPSDEDVQVS EVFNSQSSSY 180 GNLIEEEAAA PKSSKPTSKK SGGRVRPASQ TYDHIIAERK RREILSQRFM ALSTLVPGLK 240 KMDKTSVLGD AIKYLKYLQE RVQILEDQAA KQTMESVVMV KKSHVFIQEE EDDEEGSSDD 300 QITSDGGSSE EHPLPEIEVK VCNKTLLLRI HCEKQKGVLI KLLXXXXXXX XXXXXXXRIQ 360 HDNDTSD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 217 | 222 | ERKRRE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027107757.1 | 1e-83 | transcription factor bHLH18-like | ||||
TrEMBL | A0A0M3LQV6 | 0.0 | A0A0M3LQV6_CATRO; BHLH iridoid synthesis 2 |