PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2845_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 327aa    MW: 37020.3 Da    PI: 4.504
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2845_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.5e-11239284555
                                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                         h ++Er+RR+ + ++f  L +l+P +     kK++K ++L  A++Y+k+Lq
  cra_locus_2845_iso_2_len_984_ver_3 239 HIIAERKRREILSQRFMALSTLVPGL-----KKMDKTSVLGDAIKYLKYLQ 284
                                         899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.716234283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-16235299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-15239298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.53E-13239288No hitNo description
PfamPF000105.7E-9239284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-12240289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
GAQKEKLLHL PLEMMTMMMD NSATSPNCFS ELQQGMEDPT NFLISNDDKC DVMEFLDEDI  60
CAVLGQDYFQ ISSFSPNDYS FSPNLDPNST LYPSSSSTPM DILDQSPPFM LDDDIDETMN  120
RRPAKQLKST SNNNQNNQNP STIHDSFDAQ MSTPYLLTFG NPNSPEIINP PHHQQHHQPN  180
ATLNLNPSDE DVQVSEVFNS QSSSYGNLIE EEAAAPKSSK PTSKKSGGRV RPASQTYDHI  240
IAERKRREIL SQRFMALSTL VPGLKKMDKT SVLGDAIKYL KYLQERVQIL EDQAAKQTME  300
SVVMVKKSHV FIQEEEEEED DIRRIFR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242247ERKRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027114694.11e-67transcription factor bHLH18-like isoform X3
RefseqXP_027114695.11e-67transcription factor bHLH18-like isoform X3
TrEMBLA0A0M3LQV60.0A0A0M3LQV6_CATRO; BHLH iridoid synthesis 2