PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_28262_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 290aa    MW: 32127.9 Da    PI: 8.4617
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_28262_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.33.7e-34140197259
                                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                          +Dgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers +dp++v++tYeg+Hnh+
  cra_locus_28262_iso_1_len_891_ver_3 140 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCPVKKRVERSFQDPSIVITTYEGTHNHH 197
                                          8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-35124199IPR003657WRKY domain
SuperFamilySSF1182905.1E-30131199IPR003657WRKY domain
PROSITE profilePS5081132.432134199IPR003657WRKY domain
SMARTSM007741.8E-39139198IPR003657WRKY domain
PfamPF031067.5E-27140197IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
PSFMSLGEFL LQGSSDHHHH PDAIARAFGL SSSVDIQQPA APKSSFPLVV KDHDQGATCG  60
GEIPVTPNSS ISSSSTEAAN GDHEDTNNKG KKDKQQLMDT HEDDHESPKK DQNKSKKKGE  120
KKEKQPRFAF MTKSEVDHLE DGYRWRKYGQ KAVKNSPYPR SYYRCTTQKC PVKKRVERSF  180
QDPSIVITTY EGTHNHHVPA TLRGNVAAGL MLHPPMSSIL NPTGPPPPTS LLPQQLLAQM  240
PPHLYGHGGG SGAGSMYQQN QNQFQQQLQF QDYGLLQDMV PGSMFMKPEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-29129200778Probable WRKY transcription factor 4
2lex_A4e-29129200778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022879638.12e-92probable WRKY transcription factor 71
SwissprotQ93WV43e-56WRK71_ARATH; WRKY transcription factor 71
TrEMBLA0A068UDG74e-90A0A068UDG7_COFCA; Uncharacterized protein
STRINGXP_009616483.15e-77(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14852475
Publications ? help Back to Top
  1. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  2. Yu Y, et al.
    WRKY71 accelerates flowering via the direct activation of FLOWERING LOCUS T and LEAFY in Arabidopsis thaliana.
    Plant J., 2016. 85(1): p. 96-106
    [PMID:26643131]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Yu Y, et al.
    WRKY71 Acts Antagonistically Against Salt-Delayed Flowering in Arabidopsis thaliana.
    Plant Cell Physiol., 2018. 59(2): p. 414-422
    [PMID:29272465]