PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_2813_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | LSD | ||||||||
Protein Properties | Length: 145aa MW: 15104.7 Da PI: 7.9177 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 46.2 | 7.6e-15 | 28 | 52 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP GA+sV+Ca+C++V cra_locus_2813_iso_4_len_842_ver_3 28 CSGCRNLLMYPVGATSVCCAVCNAV 52 ************************9 PP | |||||||
2 | zf-LSD1 | 46.5 | 5.8e-15 | 67 | 91 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+t+ cra_locus_2813_iso_4_len_842_ver_3 67 CGGCHTLLMYIRGATSVQCSCCHTI 91 ***********************97 PP | |||||||
3 | zf-LSD1 | 41.9 | 1.7e-13 | 105 | 129 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V cra_locus_2813_iso_4_len_842_ver_3 105 CGNCRMLLMYQYGARSVKCAVCNFV 129 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.90.10.10 | 2.4E-4 | 23 | 126 | No hit | No description |
TIGRFAMs | TIGR01053 | 6.0E-14 | 25 | 55 | IPR005735 | Zinc finger, LSD1-type |
SuperFamily | SSF48695 | 1.0E-4 | 28 | 126 | IPR011031 | Multihaem cytochrome |
Pfam | PF06943 | 1.2E-11 | 28 | 52 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.1E-14 | 64 | 93 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 9.8E-13 | 67 | 91 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.0E-12 | 102 | 130 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.0E-12 | 105 | 129 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MPVPLAPYPS PPVPFTPPAN GAQSQLVCSG CRNLLMYPVG ATSVCCAVCN AVTAVPPPGT 60 EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT INLAMEANQV AHVNCGNCRM LLMYQYGARS 120 VKCAVCNFVT PVGASGSTTE QKFNA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024994470.1 | 1e-93 | protein LOL1 | ||||
Swissprot | Q93ZB1 | 1e-81 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | A0A103XQX8 | 1e-92 | A0A103XQX8_CYNCS; Zinc finger, LSD1-type | ||||
STRING | VIT_02s0012g00990.t01 | 2e-92 | (Vitis vinifera) | ||||
STRING | cassava4.1_018557m | 2e-92 | (Manihot esculenta) |
Publications ? help Back to Top | |||
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