PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_2813_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | LSD | ||||||||
Protein Properties | Length: 114aa MW: 12375.2 Da PI: 8.331 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 47.1 | 3.9e-15 | 9 | 33 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+t+ cra_locus_2813_iso_2_len_426_ver_3 9 CGGCHTLLMYIRGATSVQCSCCHTI 33 ***********************97 PP | |||||||
2 | zf-LSD1 | 42.4 | 1.1e-13 | 74 | 98 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V cra_locus_2813_iso_2_len_426_ver_3 74 CGNCRMLLMYQYGARSVKCAVCNFV 98 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 7.0E-15 | 6 | 35 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 6.6E-13 | 9 | 33 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.0E-12 | 71 | 99 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 6.9E-13 | 74 | 98 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTINLAMEGK HENVKIMTFK SINSLKMDHV 60 YXNVAANQVA HVNCGNCRML LMYQYGARSV KCAVCNFVTP VGASGSTTEQ KFNA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021895584.1 | 2e-49 | protein LOL1 | ||||
Refseq | XP_021895585.1 | 2e-49 | protein LOL1 | ||||
Swissprot | Q93ZB1 | 3e-46 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | A0A2G5CN89 | 5e-51 | A0A2G5CN89_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_044_00148.1 | 8e-52 | (Aquilegia coerulea) |
Publications ? help Back to Top | |||
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