PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_2810_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 238aa MW: 27422.5 Da PI: 10.0513 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.7 | 6.4e-19 | 19 | 62 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l+ a++ +G++ W++I+r ++ gRt++ +k++w+ cra_locus_2810_iso_3_len_757_ver_3 19 RRPFTEEEEERLLAAHRIHGNK-WALISRLFP-GRTDNAVKNHWHV 62 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-9 | 2 | 24 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.71E-22 | 2 | 69 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.347 | 14 | 68 | IPR017930 | Myb domain |
SMART | SM00717 | 5.7E-16 | 18 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-15 | 19 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-17 | 25 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.36E-7 | 30 | 61 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
XGKSCRLRWF NQLDPRINRR PFTEEEEERL LAAHRIHGNK WALISRLFPG RTDNAVKNHW 60 HVIMARRQRE QSKLCGKRSY NELVISTTDP SNSPSFGFRR KYSRTQEDFG SKISFGNSSF 120 FYEEFQNPNR NSLFSVSTSS SPWMSCNQRY LLNSSVIGSY GNYKRAIMNP FGFPVCGDHG 180 KSEANGKNKR GLQVMNNIGH DHNCFPFGKS IEKKHNEDDQ SIPKEDIPFI DFLGVGIS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-19 | 2 | 67 | 42 | 107 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027148060.1 | 4e-83 | transcription factor LAF1-like | ||||
TrEMBL | A0A1S4CZL1 | 5e-70 | A0A1S4CZL1_TOBAC; transcription factor LAF1-like | ||||
TrEMBL | A0A1U7VS80 | 5e-70 | A0A1U7VS80_NICSY; transcription factor LAF1-like | ||||
STRING | XP_009769218.1 | 8e-71 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1784 | 24 | 66 |