PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2781_iso_8
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family CAMTA
Protein Properties Length: 1067aa    MW: 119061 Da    PI: 5.9373
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2781_iso_8genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1181.41e-56211363118
                                 CG-1   3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvg 76 
                                          + ++rwl++ ei++iL n++k+++t e++ +p sgs++L++rk++ryfrkDG+sw+kkkdgktv+E+hekLKvg
  cra_locus_2781_iso_8_len_3610_ver_3  21 EAQHRWLRPAEICEILRNYQKFHITPEPPLKPVSGSVFLFDRKVLRYFRKDGHSWRKKKDGKTVKEAHEKLKVG 94 
                                          569*********************************************************************** PP

                                 CG-1  77 gvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118
                                          ++++l+cyYah+een++fqrr+yw+Le++l +iv+vhylevk
  cra_locus_2781_iso_8_len_3610_ver_3  95 SIDMLHCYYAHGEENENFQRRSYWMLEQDLMHIVFVHYLEVK 136
                                          ***************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.98315141IPR005559CG-1 DNA-binding domain
SMARTSM010761.5E-7918136IPR005559CG-1 DNA-binding domain
PfamPF038592.2E-5021135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.105.1E-7483571IPR013783Immunoglobulin-like fold
PfamPF018335.0E-9484570IPR002909IPT domain
SuperFamilySSF812962.52E-18485571IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.207.3E-17666775IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.17E-17670775IPR020683Ankyrin repeat-containing domain
CDDcd002043.70E-15674772No hitNo description
PROSITE profilePS5029717.369680774IPR020683Ankyrin repeat-containing domain
PfamPF127961.3E-6685775IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.671713739IPR002110Ankyrin repeat
SMARTSM002480.0032713742IPR002110Ankyrin repeat
SMARTSM002481500752781IPR002110Ankyrin repeat
SuperFamilySSF525402.55E-7887939IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.17888910IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.84889918IPR000048IQ motif, EF-hand binding site
PfamPF006120.0026890909IPR000048IQ motif, EF-hand binding site
SMARTSM000150.003911933IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.432912936IPR000048IQ motif, EF-hand binding site
PfamPF006121.9E-4914933IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1067 aa     Download sequence    Send to blast
MAGSGSQNLG FRLDIKQILC EAQHRWLRPA EICEILRNYQ KFHITPEPPL KPVSGSVFLF  60
DRKVLRYFRK DGHSWRKKKD GKTVKEAHEK LKVGSIDMLH CYYAHGEENE NFQRRSYWML  120
EQDLMHIVFV HYLEVKGNKT NINCLLDSET VSSNSQNDTL SFSSSANGDN LAAAYTDTTS  180
PTSTLTSAYE ETECAQQNVE DNYRPSSRVH SHPGTPQSES IPAAQHVDAG LSSSYSLLQS  240
LGTQMTPSGE YIPFSHGQGG AHGHEGSFVP GIQRTLDLAS WEEVWGNSTT AEISSDHHSW  300
NPSGLQANWQ YPQGDSSLSF QGLPEQNLIS SSASDDRGNF LDHRSIPANF QRLADPFYVN  360
AEGLEKELVQ REHQKLLSNA QISYMKKDKA ENGNAAMGSG SLVLKQSQLS GIKIDDGLKK  420
VDSFSRWMAK ELGEVEELHL QTNNGYSWSE IQTEDVVDSS GMPSQLQLEA DTLNFSLSQD  480
QLFSITDFSP NWAYSNSETK VIITGRYLKS DQLFVNCKWS CMFGEVEVPA VVLGEGVLCC  540
HAPRHKPGLV PFYVTCSNRL ACSEVRDFEY RAGPQDIPRG DTDVMHICRR LDRLLSIGPV  600
VSINNFSENV VERNDIVKKI ISLMEEDDNQ MPKLASGKDI SLLKAVEVQQ AEKWLRDKFY  660
EWILNKVKED GRGPSIIDDE GQGVLHLAAA LGFNWALEPI IVSGVSIDFR DVNGWTALHW  720
AAFYGREDTV AALVSLGASC GPLTDPTAEH PLGRTPADLA SANGHKGISG FLAECSLTAH  780
LELLTVKETE EDSTLEYSGA NAIQTVSERV AAPISGGDVP DSLSLKDSLA AVCNATQAAA  840
RIHQIFRVQS FQRKQLIERT VNDDASSDEY ALSILAAKTS RLGQNDVTAH AAAVSIQKKY  900
RGWKKRKEFL IIRQRIVKIQ AHVRGHQVRK KYKPIIWSVG ILEKVILRWR RKGSGLRGYR  960
PDAVAKVPGE LDMPQKEDDY DFLKEGRKQT EERLQKALTR VKSMAQYPEA RAQYRRLLTV  1020
AEGLRQTKDA SDMVVTSGSE NVSYPEEDLL DVENLLDDET FMSIAFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cxk_A2e-13485574992calmodulin binding transcription activator 1
2cxk_B2e-13485574992calmodulin binding transcription activator 1
2cxk_C2e-13485574992calmodulin binding transcription activator 1
2cxk_D2e-13485574992calmodulin binding transcription activator 1
2cxk_E2e-13485574992calmodulin binding transcription activator 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027106275.10.0calmodulin-binding transcription activator 2-like isoform X1
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A068TQ040.0A0A068TQ04_COFCA; Uncharacterized protein
STRINGXP_009600617.10.0(Nicotiana tomentosiformis)
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]