PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2775_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GRAS
Protein Properties Length: 630aa    MW: 68956.5 Da    PI: 8.0529
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2775_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS355.95.9e-1092636303374
                                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsse 76 
                                          + ++e+A+a+++g++e a +lL+rls+ ++ +g++ qRl+ay+t AL++r++       +  pp   s   s+e
  cra_locus_2775_iso_2_len_2357_ver_3 263 QSITEAATAIAEGKAEVAGELLTRLSQVSNVRGSSEQRLTAYMTSALRSRVNP------SEYPPPV-SVLYSKE 329
                                          67899***********************************************9......3332222.2245899 PP

                                 GRAS  77 elaalklfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgv 147
                                          ++ ++++++evsP++k+++++aN aIl+a++++  +++H+iDfdi+qG+Q++ Ll+aLa+R+ e p+ l+iT++
  cra_locus_2775_iso_2_len_2357_ver_3 330 HTLSTQMLYEVSPCFKLGFMAANLAILDATSEQrvNKLHVIDFDIGQGGQYMHLLHALAARKaERPAVLKITTF 403
                                          999****************************998999************************9556669****** PP

                                 GRAS 148 gspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsle 221
                                          ++ ++g +e+++++g+ L+ +A+++gv+++f+v v+ +++dl+ e+L + ++Eal+Vn++++l++l+desv++e
  cra_locus_2775_iso_2_len_2357_ver_3 404 ADFANGGEESVRSVGNGLKVLANKIGVSLNFSV-VSWKISDLNREKLGLGSDEALVVNFAFRLYKLPDESVTTE 476
                                          ********************************9.799************************************* PP

                                 GRAS 222 serdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                                          + rde+L+ vkslsP vv++veqe++ n+++F++r+ ea+ yy +lf+sl+a+++r+s++r+ +E+  l+r+  
  cra_locus_2775_iso_2_len_2357_ver_3 477 NLRDELLRRVKSLSPMVVTLVEQEMSANTAPFVARVNEACGYYGVLFESLDATVSRDSSDRVRIEEG-LSRKMA 549
                                          *******************************************************************.****** PP

                                 GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpL 367
                                          n vaceg++r+er+e ++kWr+rl++aGF+  p+s+++a++ ++ l+     + g++v+e+sg +++gW++r+L
  cra_locus_2775_iso_2_len_2357_ver_3 550 NSVACEGRDRIERCEVFGKWRARLSMAGFQLKPMSSSVADSLRSKLESGTrgNPGFTVNEQSGGICFGWMGRSL 623
                                          ********************************************99876556899******************* PP

                                 GRAS 368 vsvSaWr 374
                                          +++SaWr
  cra_locus_2775_iso_2_len_2357_ver_3 624 TVASAWR 630
                                          ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.395235608IPR005202Transcription factor GRAS
PfamPF035142.0E-106263630IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MGMNNQQVPY RSSLGGIMPD PSSRGGPDLM GKRSLAEFQQ QQQQNQQIFQ QHQMGLGGGI  60
YNNLRNVKPR INYQHTSPIS PLSPVDFSTV SSLSSGESSI SSVSNSSPMN PRYGLPILQQ  120
LRPHQRFSNL TSFGNGNFMQ PAGNPNNFSS NSSISFQNLD QNHYQRSVFS PMGQGLLASQ  180
DQSEKKMMNQ LQELEKQLLD DDDNDNSGDA VSVVTNSEWS ETIQNLNMMT SNKKQQPISP  240
SPTSSSSSCS STSASPPITC PKQSITEAAT AIAEGKAEVA GELLTRLSQV SNVRGSSEQR  300
LTAYMTSALR SRVNPSEYPP PVSVLYSKEH TLSTQMLYEV SPCFKLGFMA ANLAILDATS  360
EQRVNKLHVI DFDIGQGGQY MHLLHALAAR KAERPAVLKI TTFADFANGG EESVRSVGNG  420
LKVLANKIGV SLNFSVVSWK ISDLNREKLG LGSDEALVVN FAFRLYKLPD ESVTTENLRD  480
ELLRRVKSLS PMVVTLVEQE MSANTAPFVA RVNEACGYYG VLFESLDATV SRDSSDRVRI  540
EEGLSRKMAN SVACEGRDRI ERCEVFGKWR ARLSMAGFQL KPMSSSVADS LRSKLESGTR  600
GNPGFTVNEQ SGGICFGWMG RSLTVASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-442636306375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027160939.10.0scarecrow-like protein 8
TrEMBLA0A068U9C20.0A0A068U9C2_COFCA; Uncharacterized protein
STRINGXP_009787242.10.0(Nicotiana sylvestris)