PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_2775_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | GRAS | ||||||||
Protein Properties | Length: 630aa MW: 68956.5 Da PI: 8.0529 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 355.9 | 5.9e-109 | 263 | 630 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsse 76 + ++e+A+a+++g++e a +lL+rls+ ++ +g++ qRl+ay+t AL++r++ + pp s s+e cra_locus_2775_iso_1_len_2357_ver_3 263 QSITEAATAIAEGKAEVAGELLTRLSQVSNVRGSSEQRLTAYMTSALRSRVNP------SEYPPPV-SVLYSKE 329 67899***********************************************9......3332222.2245899 PP GRAS 77 elaalklfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgv 147 ++ ++++++evsP++k+++++aN aIl+a++++ +++H+iDfdi+qG+Q++ Ll+aLa+R+ e p+ l+iT++ cra_locus_2775_iso_1_len_2357_ver_3 330 HTLSTQMLYEVSPCFKLGFMAANLAILDATSEQrvNKLHVIDFDIGQGGQYMHLLHALAARKaERPAVLKITTF 403 999****************************998999************************9556669****** PP GRAS 148 gspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsle 221 ++ ++g +e+++++g+ L+ +A+++gv+++f+v v+ +++dl+ e+L + ++Eal+Vn++++l++l+desv++e cra_locus_2775_iso_1_len_2357_ver_3 404 ADFANGGEESVRSVGNGLKVLANKIGVSLNFSV-VSWKISDLNREKLGLGSDEALVVNFAFRLYKLPDESVTTE 476 ********************************9.799************************************* PP GRAS 222 serdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 + rde+L+ vkslsP vv++veqe++ n+++F++r+ ea+ yy +lf+sl+a+++r+s++r+ +E+ l+r+ cra_locus_2775_iso_1_len_2357_ver_3 477 NLRDELLRRVKSLSPMVVTLVEQEMSANTAPFVARVNEACGYYGVLFESLDATVSRDSSDRVRIEEG-LSRKMA 549 *******************************************************************.****** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpL 367 n vaceg++r+er+e ++kWr+rl++aGF+ p+s+++a++ ++ l+ + g++v+e+sg +++gW++r+L cra_locus_2775_iso_1_len_2357_ver_3 550 NSVACEGRDRIERCEVFGKWRARLSMAGFQLKPMSSSVADSLRSKLESGTrgNPGFTVNEQSGGICFGWMGRSL 623 ********************************************99876556899******************* PP GRAS 368 vsvSaWr 374 +++SaWr cra_locus_2775_iso_1_len_2357_ver_3 624 TVASAWR 630 ******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 48.395 | 235 | 608 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.0E-106 | 263 | 630 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm |
Sequence ? help Back to Top |
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Protein Sequence Length: 630 aa Download sequence Send to blast |
MGMNNQQVPY RSSLGGIMPD PSSRGGPDLM GKRSLAEFQQ QQQQNQQIFQ QHQMGLGGGI 60 YNNLRNVKPR INYQHTSPIS PLSPVDFSTV SSLSSGESSI SSVSNSSPMN PRYGLPILQQ 120 LRPHQRFSNL TSFGNGNFMQ PAGNPNNFSS NSSISFQNLD QNHYQRSVFS PMGQGLLASQ 180 DQSEKKMMNQ LQELEKQLLD DDDNDNSGDA VSVVTNSEWS ETIQNLNMMT SNKKQQPISP 240 SPTSSSSSCS STSASPPITC PKQSITEAAT AIAEGKAEVA GELLTRLSQV SNVRGSSEQR 300 LTAYMTSALR SRVNPSEYPP PVSVLYSKEH TLSTQMLYEV SPCFKLGFMA ANLAILDATS 360 EQRVNKLHVI DFDIGQGGQY MHLLHALAAR KAERPAVLKI TTFADFANGG EESVRSVGNG 420 LKVLANKIGV SLNFSVVSWK ISDLNREKLG LGSDEALVVN FAFRLYKLPD ESVTTENLRD 480 ELLRRVKSLS PMVVTLVEQE MSANTAPFVA RVNEACGYYG VLFESLDATV SRDSSDRVRI 540 EEGLSRKMAN SVACEGRDRI ERCEVFGKWR ARLSMAGFQL KPMSSSVADS LRSKLESGTR 600 GNPGFTVNEQ SGGICFGWMG RSLTVASAWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 7e-44 | 263 | 630 | 6 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027160939.1 | 0.0 | scarecrow-like protein 8 | ||||
TrEMBL | A0A068U9C2 | 0.0 | A0A068U9C2_COFCA; Uncharacterized protein | ||||
STRING | XP_009787242.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4023 | 24 | 43 |