PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2766_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HSF
Protein Properties Length: 340aa    MW: 39059.6 Da    PI: 4.6664
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2766_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.99e-35141072103
                                          HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT CS
                         HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks 74 
                                          Fl k ye+++de++++lisws + +nsf+++d  +f++++LpkyFkhsnf+SF+RQLn+YgF+k+++++     
  cra_locus_2766_iso_1_len_1437_ver_3  14 FLLKCYEMVDDESTDSLISWSeSYSNSFIIWDVPKFQSELLPKYFKHSNFSSFIRQLNIYGFRKTDTDR----- 82 
                                          9********************7778****************************************9999..... PP

                                          XTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
                         HSF_DNA-bind  75 kekiweFkhksFkkgkkellekikrkkse 103
                                              weF++++F kg+k+ll++i r+k++
  cra_locus_2766_iso_1_len_1437_ver_3  83 ----WEFSNDEFVKGQKHLLKNIIRRKQS 107
                                          ....*******************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.0E-35899IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.26E-329104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.0E-5310104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-181437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-2914104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-185365IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-186678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MVKTFEDGSS VPPFLLKCYE MVDDESTDSL ISWSESYSNS FIIWDVPKFQ SELLPKYFKH  60
SNFSSFIRQL NIYGFRKTDT DRWEFSNDEF VKGQKHLLKN IIRRKQSQGQ GQSQRKSSSR  120
QKETESPVSE EHKRIALSKE VESLKTDKNA LMQELGKLRQ KQQSSQSKML VLREQMKGME  180
KNQQQMLSFI VMAMQNPGFF VQLLQPKESN WRPAETGKNV ISRVADDVES EPVSSDKLIV  240
RYQLPMGEAS EPPCSAPSSN SEMSMEWDIS DEMRDLLMNI DFTPGPSDEK LLPFENHEPV  300
VLSDIPDGDF MLEQLLLSSP IKENMVSDEL DSNCTDGXQX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-24910424129Heat shock factor protein 1
5d5v_B2e-24910424129Heat shock factor protein 1
5d5v_D2e-24910424129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027176318.11e-164heat stress transcription factor A-8-like isoform X1
TrEMBLA0A068UBK31e-163A0A068UBK3_COFCA; Uncharacterized protein
STRINGXP_009770996.11e-135(Nicotiana sylvestris)