PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_27637_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB | ||||||||
Protein Properties | Length: 230aa MW: 26839.6 Da PI: 8.7797 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.1 | 1.5e-16 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+ ++++G +W++ ++ g+ R++k+c++rw +yl cra_locus_27637_iso_1_len_721_ver_3 10 KGAWTAEEDHILISFIQKYGHQNWRALPKQAGLLRCGKSCRLRWTNYL 57 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 55.4 | 1.4e-17 | 63 | 108 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+e ++++++ G++ W++Ia +++ gRt++++k++w+++l cra_locus_27637_iso_1_len_721_ver_3 63 RGNFTKEEEETIINLHQFIGNR-WSAIATRLP-GRTDNEIKNYWHTHL 108 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.868 | 5 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.5E-30 | 6 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-12 | 9 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-15 | 10 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-24 | 11 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.58E-9 | 12 | 57 | No hit | No description |
PROSITE profile | PS51294 | 25.092 | 58 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-16 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-16 | 63 | 108 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.26E-11 | 65 | 108 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-27 | 65 | 112 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
XCCERMGMKK GAWTAEEDHI LISFIQKYGH QNWRALPKQA GLLRCGKSCR LRWTNYLRPD 60 IKRGNFTKEE EETIINLHQF IGNRWSAIAT RLPGRTDNEI KNYWHTHLKK RVQENSAMAS 120 SKRQRFGSNN IRISETWNFS NQYLNNFKNI NGYCYNANNF HTNWSGELAG EIDHDDRKSS 180 SDGQDQICLM NKVLMESRSR AEVLSTTTGE YDFSNNDADF WYNVFVNAGN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-28 | 8 | 112 | 5 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027155457.1 | 2e-77 | transcription factor MYB4-like | ||||
TrEMBL | A0A2G2WUB3 | 2e-75 | A0A2G2WUB3_CAPBA; Myb-related protein Zm1 | ||||
STRING | XP_009606766.1 | 4e-75 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |