PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_27627_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | G2-like | ||||||||
Protein Properties | Length: 295aa MW: 32545.8 Da PI: 9.3292 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.7 | 2.3e-32 | 102 | 155 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ cra_locus_27627_iso_1_len_943_ver_3 102 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 155 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.36E-15 | 99 | 155 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.7E-29 | 100 | 155 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.1E-24 | 102 | 155 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.4E-7 | 103 | 154 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009887 | Biological Process | organ morphogenesis | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
SSSSTPPYFD HLSILNSPNN PLSPAAAYRI TGGGGSTRFN GLSSSYLHHH QYGGGGGLGS 60 DHHHHHHHHQ SNISHHHHGM MMRSSSSRFL PKLPQKRSMR APRMRWTSTL HARFVHAVEL 120 LGGHERATPK SVLELMDVKD LTLAHVKSHL QMYRTVKTTD KPAASSGQSD GSGDEDLSTM 180 GSVGGGDRSG LRRLMDQRGP SDGQQESDYP STTTTLWSNS SSSREAWLQT NTGDMNGHRS 240 NSTHTPLLEQ RSPRQIIEEC DSSRTNSYLL SGLNHKNPSL EFTLGRPDWV EKEHA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 7e-16 | 103 | 157 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 7e-16 | 103 | 157 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 7e-16 | 103 | 157 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 7e-16 | 103 | 157 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027073674.1 | 1e-123 | transcription repressor KAN1-like | ||||
Refseq | XP_027077554.1 | 1e-123 | transcription repressor KAN1-like | ||||
Swissprot | Q0J235 | 5e-63 | ROLL9_ORYSJ; Probable transcription factor RL9 | ||||
TrEMBL | A0A068TZL4 | 1e-123 | A0A068TZL4_COFCA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400034663 | 1e-107 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2468 | 23 | 55 |