PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_27585_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | GRAS | ||||||||
Protein Properties | Length: 97aa MW: 11480.3 Da PI: 3.9965 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 35.5 | 1.4e-11 | 7 | 83 | 248 | 322 |
GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae..r.rerhetlekWrer 318 ++ +Fl+ f e+l+ + f++le+++p++s+er ++Ere +r+i +++c + r e e+ +W+er cra_locus_27585_iso_1_len_288_ver_3 7 NSRMDFLKCFKECLRLTTLYFEMLEESFPPTSNERLMLERE-YSRSIIRILSCDDDIvdRdSECWESSVQWSER 79 45779************************************.89*********9874224145568999***** PP GRAS 319 leea 322 l+ea cra_locus_27585_iso_1_len_288_ver_3 80 LQEA 83 *986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 5.0E-9 | 7 | 83 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 97 aa Download sequence Send to blast |
XEADFCNSRM DFLKCFKECL RLTTLYFEML EESFPPTSNE RLMLEREYSR SIIRILSCDD 60 DIVDRDSECW ESSVQWSERL QEASSLFGYS NDIVDGX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 1e-13 | 11 | 95 | 350 | 432 | Protein SHORT-ROOT |
5b3h_B | 1e-13 | 11 | 95 | 296 | 378 | Protein SHORT-ROOT |
5b3h_E | 1e-13 | 11 | 95 | 296 | 378 | Protein SHORT-ROOT |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027117536.1 | 5e-39 | protein SHORT-ROOT-like | ||||
TrEMBL | A0A068U5L3 | 1e-37 | A0A068U5L3_COFCA; Uncharacterized protein | ||||
STRING | POPTR_0017s05450.1 | 6e-33 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2031 | 24 | 64 |