PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2714_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GRAS
Protein Properties Length: 527aa    MW: 60117.4 Da    PI: 9.2706
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2714_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3811.5e-1161545251374
                                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekns 74 
                                          l++lL++cA+av+++d ++a++lL+++++++sp gd +qRl ++f+ +L+arla+++s++ykal  ++ts    
  cra_locus_2714_iso_1_len_2184_ver_3 154 LRTLLIHCAQAVAADDRRNANELLKQIRQHSSPFGDGNQRLSHCFADGLEARLAGTGSQIYKALVNKRTS---A 224
                                          6789************************************************************999998...8 PP

                                 GRAS  75 seelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvg 148
                                          ++ l+a++l+   +P+ k+s ++ N++I+  +e+++rvH+iDf+i +G+QWp+++q +a R++gpp+lRiTg++
  cra_locus_2714_iso_1_len_2184_ver_3 225 ASFLKAYHLYLASCPFRKISSFASNKTIMIKAENATRVHVIDFGILYGFQWPTFIQRIAGRKGGPPRLRITGIE 298
                                          9************************************************************************* PP

                                 GRAS 149 spesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsl 220
                                           p++g   +e++eetg+rL+++A+ ++vpf++n+ vak++e+++le+L+++++E ++Vn++++ ++llde+v +
  cra_locus_2714_iso_1_len_2184_ver_3 299 FPQPGfrPAEQIEETGRRLTEYAKMFDVPFDYNP-VAKKWETITLEDLKIQEDEFIVVNSIYRFKNLLDETVLV 371
                                          ****9*****************************.7************************************** PP

                                 GRAS 221 eserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                                          +s r+ vL+l+++++P+ +++   +  ++++ F++rf eal ++salfd+le+++pre  er+ +E+e++gre+
  cra_locus_2714_iso_1_len_2184_ver_3 372 DSSRTVVLNLIRKINPNFFIHGIVNGAYSAPFFVTRFREALFHFSALFDMLETNVPREIPERMLIEKEIFGREA 445
                                          ************************************************************************** PP

                                 GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
                                           nv+aceg er+er et+++W+ r  +aGFk++p+++++ + a   + k + + + ++e++++l+lgWk+r ++
  cra_locus_2714_iso_1_len_2184_ver_3 446 LNVIACEGWERVERPETYKQWQVRYLRAGFKQIPFEQSISSRALEKVTKGYHKDFVIDEDNNWLLLGWKGRIIY 519
                                          *******************************************99999999788******************** PP

                                 GRAS 369 svSaWr 374
                                           +S+W+
  cra_locus_2714_iso_1_len_2184_ver_3 520 GLSCWQ 525
                                          *****6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.19128505IPR005202Transcription factor GRAS
PfamPF035145.1E-114154525IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
DESHSVWNFR KGVEEASKFL PDGNKLLSFS TPLPWELKGE TDAVAVKSEG KDEGDVLSIV  60
SRGRKNPPDR DFDLEEERSS KQAAVYTEST IRSEEFDIVL LHSMGKGQEA LEAYRENLQT  120
AKSKNVRQNG HTKGPSGGKG RGKKQNGKKE VVDLRTLLIH CAQAVAADDR RNANELLKQI  180
RQHSSPFGDG NQRLSHCFAD GLEARLAGTG SQIYKALVNK RTSAASFLKA YHLYLASCPF  240
RKISSFASNK TIMIKAENAT RVHVIDFGIL YGFQWPTFIQ RIAGRKGGPP RLRITGIEFP  300
QPGFRPAEQI EETGRRLTEY AKMFDVPFDY NPVAKKWETI TLEDLKIQED EFIVVNSIYR  360
FKNLLDETVL VDSSRTVVLN LIRKINPNFF IHGIVNGAYS APFFVTRFRE ALFHFSALFD  420
MLETNVPREI PERMLIEKEI FGREALNVIA CEGWERVERP ETYKQWQVRY LRAGFKQIPF  480
EQSISSRALE KVTKGYHKDF VIDEDNNWLL LGWKGRIIYG LSCWQPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-531375261379Protein SCARECROW
5b3h_D2e-531375261379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027072045.10.0scarecrow-like protein 9
RefseqXP_027072048.10.0scarecrow-like protein 9
RefseqXP_027072054.10.0scarecrow-like protein 9
RefseqXP_027072061.10.0scarecrow-like protein 9
RefseqXP_027072067.10.0scarecrow-like protein 9
RefseqXP_027072075.10.0scarecrow-like protein 9
RefseqXP_027072080.10.0scarecrow-like protein 9
RefseqXP_027072086.10.0scarecrow-like protein 9
RefseqXP_027072093.10.0scarecrow-like protein 9
RefseqXP_027072096.10.0scarecrow-like protein 9
RefseqXP_027072099.10.0scarecrow-like protein 9
RefseqXP_027072105.10.0scarecrow-like protein 9
RefseqXP_027072109.10.0scarecrow-like protein 9
RefseqXP_027175795.10.0scarecrow-like protein 9
RefseqXP_027175796.10.0scarecrow-like protein 9
RefseqXP_027175798.10.0scarecrow-like protein 9
RefseqXP_027175799.10.0scarecrow-like protein 9
RefseqXP_027175800.10.0scarecrow-like protein 9
RefseqXP_027175801.10.0scarecrow-like protein 9
RefseqXP_027175802.10.0scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A068V0N60.0A0A068V0N6_COFCA; Uncharacterized protein
STRINGXP_009622916.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191