PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_26578_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | LBD | ||||||||
Protein Properties | Length: 315aa MW: 34403.6 Da PI: 7.7593 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 40.6 | 7.2e-13 | 4 | 63 | 1 | 55 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeere 55 +C++C+vlr++C+++C l ++ p++q++++ +++k++G++ +l+ll+a p++ r+ cra_locus_26578_iso_2_len_1457_ver_3 4 SCNGCRVLRKGCNEKCNLKTCLqwiksPESQANATVFLAKFYGRAGLLNLLNAGPQHLRP 63 6******************************************************99986 PP | |||||||
2 | DUF260 | 34.7 | 5.1e-11 | 99 | 141 | 56 | 98 |
DUF260 56 damsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 ++++sl+yeA+ r+ +P+yG++g++++++++l+q+++e +l + cra_locus_26578_iso_2_len_1457_ver_3 99 AIFRSLLYEACGRIVNPIYGSAGLLWSGNWHLCQAAVEGVLNG 141 689********************************99977665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 9.353 | 3 | 144 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.5E-9 | 4 | 63 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.7E-6 | 99 | 136 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCNEKCN LKTCLQWIKS PESQANATVF LAKFYGRAGL LNLLNAGPQH 60 LRPGNFILTT SKFKTKKKLV YDCFVWGRKI DESLCFFAAI FRSLLYEACG RIVNPIYGSA 120 GLLWSGNWHL CQAAVEGVLN GSPITQISAD SDACTVSPPL KACDIRHVSK DENSSASAAR 180 DLHKVTKTRG KFKRTVAKPK VRAESPDVDD AARVMWSWSH KDEVIGSPSR NSGVSQHVEP 240 ENPVGDDDSG SVETVEESVV KAANKKGADR SDVELELSLG LXACPPKQVE VEINGXDESS 300 CKMDGAGCDW DLIID |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027124508.1 | 1e-130 | LOB domain-containing protein 41-like | ||||
Swissprot | Q9M886 | 2e-75 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A068TQW5 | 1e-127 | A0A068TQW5_COFCA; Uncharacterized protein | ||||
STRING | XP_009792341.1 | 1e-108 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA886 | 24 | 94 |