PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_26302_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GRAS
Protein Properties Length: 447aa    MW: 50277.4 Da    PI: 6.7173
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_26302_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS284.52.9e-87464442373
                                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn. 73 
                                           ++lL++cA+a++++d++l+q++L+ l+++a +dgd++qRl+  f++AL ar a+  ++ +k l++ ++ + n 
  cra_locus_26302_iso_1_len_1665_ver_3  46 EQLLVHCANAIETNDATLTQQILWVLNNIAPSDGDSNQRLTCGFLRALIARAAK--NGNCKVLAAMASVNANl 116
                                           79****************************************************..55555555555544443 PP

                                  GRAS  74 ..sseelaalkl..fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....eg 138
                                              ++++++ +l  f++++P+++f++ +aN aIleaveg + +Hi+D+++++++Q p+L++a+a+R      +
  cra_locus_26302_iso_1_len_1665_ver_3 117 giNIHKFSIIELanFVDLTPWHRFGFTAANGAILEAVEGYSIIHIVDLSLTHCMQIPTLIDAIATRHdhqsLP 189
                                           44555555555578****************************************************9766556 PP

                                  GRAS 139 ppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl.......vakrledleleeL.rvkpgE 200
                                           pp +++T+ g  e        +++e+g +L +fA++ +v +ef+v+        ++ +e l++++L rv+++E
  cra_locus_26302_iso_1_len_1665_ver_3 190 PPLIKLTVAGVTEGMppmLDLSYQELGMKLVNFARSRNVVMEFRVIpssssdgFSSLIEHLRMQHLvRVENNE 262
                                           99*****9999666688888999***********************9887666666677778888777888** PP

                                  GRAS 201 alaVnlvlqlhrll..........desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
                                           al++n++++lh+++          + +++++s r+ +Lk++++l+P++vv+++++ad +s++++ r+ +a +y
  cra_locus_26302_iso_1_len_1665_ver_3 263 ALVINCHMMLHYIPeetlfssngnATTTTSSSLRTMFLKALRNLEPTLVVLIDEDADFTSNNLVSRLRSAYNY 335
                                           **************99999999976677777799*************************************** PP

                                  GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336
                                            +  +d++++ lp+ s++r+++E+  + ++i+nv+a+eg +r+er e++++W +r++++ Fk +++se+  ++
  cra_locus_26302_iso_1_len_1665_ver_3 336 LWIPYDTVDTFLPKGSRQRQWYEAD-ICWKIENVIAHEGVQRIERLESKNRWVQRMRNSSFKGISFSEDGFSE 407
                                           *************************.*********************************************** PP

                                  GRAS 337 aklllrkvksdgyrve.eesgslvlgWkdrpLvsvSaW 373
                                           +k++l +++  g+ ++ e+++ lvl+Wk++++v+++ W
  cra_locus_26302_iso_1_len_1665_ver_3 408 VKSMLDEHA-AGWGLKrEDQEDLVLTWKGHNVVFATLW 444
                                           *********.667777578999**************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.28919425IPR005202Transcription factor GRAS
PfamPF035141.0E-8446444IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MHQISSFPNF VTSKNQTHRT RPWPGFPTST TKALGSSNFG DANCMEQLLV HCANAIETND  60
ATLTQQILWV LNNIAPSDGD SNQRLTCGFL RALIARAAKN GNCKVLAAMA SVNANLGINI  120
HKFSIIELAN FVDLTPWHRF GFTAANGAIL EAVEGYSIIH IVDLSLTHCM QIPTLIDAIA  180
TRHDHQSLPP PLIKLTVAGV TEGMPPMLDL SYQELGMKLV NFARSRNVVM EFRVIPSSSS  240
DGFSSLIEHL RMQHLVRVEN NEALVINCHM MLHYIPEETL FSSNGNATTT TSSSLRTMFL  300
KALRNLEPTL VVLIDEDADF TSNNLVSRLR SAYNYLWIPY DTVDTFLPKG SRQRQWYEAD  360
ICWKIENVIA HEGVQRIERL ESKNRWVQRM RNSSFKGISF SEDGFSEVKS MLDEHAAGWG  420
LKREDQEDLV LTWKGHNVVF ATLWVPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B3e-464044682474Protein SHORT-ROOT
5b3h_B1e-464044628420Protein SHORT-ROOT
5b3h_E1e-464044628420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074095.10.0scarecrow-like protein 32
SwissprotQ9SN220.0SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A068U3450.0A0A068U345_COFCA; Uncharacterized protein
STRINGVIT_07s0129g00340.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87812429