PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2625_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NF-YB

Protein Properties

Length: 176aa MW: 19048.2 Da PI: 6.1186

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2625_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	185.2	5e-58	26	123	1	98
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatl 74 vreqdrflPian++rimkk+lPan+ki+k+ak+tvqecvsefisf+tseasdkcqrekrktingddllwa+atl cra_locus_2625_iso_3_len_1183_ver_3 26 VREQDRFLPIANIGRIMKKALPANGKIAKEAKDTVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATL 99 69********************************************************************** PP NF-YB 75 Gfedyveplkvylkkyrelegekk 98 Gfe+yv+plkvyl++yre+eg++k cra_locus_2625_iso_3_len_1183_ver_3 100 GFEEYVDPLKVYLTRYREMEGDTK 123 *******************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.1E-54	21	141	IPR009072	Histone-fold
SuperFamily	SSF47113	1.52E-40	29	135	IPR009072	Histone-fold
Pfam	PF00808	3.0E-28	32	96	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	6.6E-21	60	78	No hit	No description
PROSITE pattern	PS00685	0	63	79	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	6.6E-21	79	97	No hit	No description
PRINTS	PR00615	6.6E-21	98	116	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MAEAPPVSPV GGGIESGGDQ SPQSNVREQD RFLPIANIGR IMKKALPANG KIAKEAKDTV 60 QECVSEFISF ITSEASDKCQ REKRKTINGD DLLWAMATLG FEEYVDPLKV YLTRYREMEG 120 DTKGSAKGAD GSAKRDASQL GHSSQLAHHG SFTQGMNYGN SQPQGQHMVT PMQGSE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	2e-47	26	117	1	92	Transcription factor HapC (Eurofung)
4g92_B	2e-47	26	117	1	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009620316.1	1e-103	PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X4
Refseq	XP_016449854.1	1e-103	PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X1
Swissprot	Q8VYK4	1e-85	NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A1S3YCJ2	1e-102	A0A1S3YCJ2_TOBAC; nuclear transcription factor Y subunit B-10-like isoform X1
STRING	XP_009620316.1	1e-102	(Nicotiana tomentosiformis)

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]