PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2614_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 270aa MW: 30746.6 Da PI: 8.0901

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2614_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	108	1.2e-33	2	76	54	129
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 +ekewyfF+ +d+ky+tg r+nrat++gyWkatgkdke+++ ++lvg+kktLvfy+grapkgekt+Wvmheyr cra_locus_2614_iso_5_len_1135_ver_3 2 GEKEWYFFCVKDRKYPTGLRTNRATDAGYWKATGKDKEIFK-VKSLVGMKKTLVFYRGRAPKGEKTNWVMHEYR 74 579************************************.8889************************** PP NAM 128 le 129 le cra_locus_2614_iso_5_len_1135_ver_3 75 LE 76 85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	37.637	1	99	IPR003441	NAC domain
SuperFamily	SSF101941	5.1E-35	2	99	IPR003441	NAC domain
Pfam	PF02365	2.7E-16	6	75	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MGEKEWYFFC VKDRKYPTGL RTNRATDAGY WKATGKDKEI FKVKSLVGMK KTLVFYRGRA 60 PKGEKTNWVM HEYRLEGQNS IHNLSKVAKN EWVMRIFKKS TGGKKVHISG LIKMNNYGDQ 120 EDLGTSNLPP LMDLSSEETQ PRTTTTIAEA SHVTCFSNQM EDGQKPQMPA SSILSSQIMP 180 YLESMQFGDS ISMDDHSIMR LLMDENGGNS RQNPNANNNQ EFSQETGIST DISSPVSNRV 240 EWRRPSYGHH QEFHQISSAG PVDLDCLWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-31	1	105	68	171	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-31	1	105	68	171	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-31	1	105	68	171	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-31	1	105	68	171	NO APICAL MERISTEM PROTEIN
3swm_A	8e-31	1	105	71	174	NAC domain-containing protein 19
3swm_B	8e-31	1	105	71	174	NAC domain-containing protein 19
3swm_C	8e-31	1	105	71	174	NAC domain-containing protein 19
3swm_D	8e-31	1	105	71	174	NAC domain-containing protein 19
3swp_A	8e-31	1	105	71	174	NAC domain-containing protein 19
3swp_B	8e-31	1	105	71	174	NAC domain-containing protein 19
3swp_C	8e-31	1	105	71	174	NAC domain-containing protein 19
3swp_D	8e-31	1	105	71	174	NAC domain-containing protein 19
4dul_A	7e-31	1	105	68	171	NAC domain-containing protein 19
4dul_B	7e-31	1	105	68	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028058237.1	1e-107	NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	3e-83	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A068U1T7	1e-102	A0A068U1T7_COFCA; Uncharacterized protein
STRING	VIT_14s0108g01070.t01	6e-98	(Vitis vinifera)
STRING	cassava4.1_010528m	2e-98	(Manihot esculenta)

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]