PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_26008_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | ERF | ||||||||
Protein Properties | Length: 259aa MW: 27480.5 Da PI: 9.3826 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.1 | 1.5e-20 | 23 | 73 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +++GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAa+a++aa+++++g+ cra_locus_26008_iso_1_len_979_ver_3 23 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRGA 73 69*******.**********8...557*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.22E-22 | 23 | 81 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.4E-14 | 23 | 72 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.61E-18 | 23 | 80 | No hit | No description |
SMART | SM00380 | 1.6E-38 | 23 | 86 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-32 | 23 | 80 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.894 | 23 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-11 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-11 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MAPRDKSAVG GGAGAASGVK EVHFRGVRKR PWGRYAAEIR DPGKKSRVWL GTFDTAEEAA 60 RAYDAAAREF RGAKAKTNFP LPAEEGDMNR NTLNLPNPFA NQINTNNKIN FNHSSPSQSS 120 TVESSSRETI SPAVVVADSS PSLLDLNLGG GAVRFPYPNQ QHHQFRLAQL AAGGFPGGMR 180 PQMYYMDAIA AHGLMNLPGQ QRHANPERVK VAAVDFLSGS GGSGGGVQSD SDSSSVVLDL 240 NRGDVSLNLD LNLPPPASD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-21 | 20 | 87 | 2 | 70 | ATERF1 |
3gcc_A | 1e-21 | 20 | 87 | 2 | 70 | ATERF1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022861038.1 | 3e-64 | ethylene-responsive transcription factor 4-like | ||||
TrEMBL | A1E0X9 | 1e-56 | A1E0X9_SOLTU; Ethylene response factor 3 | ||||
STRING | Solyc10g009110.1.1 | 5e-57 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |