PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2599_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Dof

Protein Properties

Length: 300aa MW: 32128.5 Da PI: 6.7446

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2599_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	43.3	7.6e-14	2	26	38	62
zf-Dof 38 ryWtkGGalrnvPvGggrrknkkss 62 ryWtkGGalrnvP+Ggg+rknkk++ cra_locus_2599_iso_1_len_899_ver_3 2 RYWTKGGALRNVPIGGGCRKNKKMK 26 9*********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-5	2	20	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.9E-8	2	24	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
XRYWTKGGAL RNVPIGGGCR KNKKMKSSSS SRLSGGGGDS KDSSTSSDIS GLKFFHGLTP 60 AMDFQIGGIN FPRLHHDSSS AVAATAGGHV YNQFSSYGDI SSNTSPAIVS TPAGFNLDPS 120 LNSNPLMGFN FPFSSGFNGG INQEMGSVNG NTSLASSIES LSSINQDLHW KLQQQRLAML 180 YGGENHQQKE TDNTIPPQTS FSSLDHHHHQ NQIQKPQPMF FHNLEISSSK AEEANGVDDN 240 SRKEGESGTG NLATEDFGNS YGPVTPTPTN STGNGNENIS SWNGMLSWGN LNQYSPLPXR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007047735.1	5e-95	PREDICTED: dof zinc finger protein DOF5.7 isoform X1
Refseq	XP_021274371.1	4e-95	dof zinc finger protein DOF5.7-like
TrEMBL	A0A061DI28	1e-93	A0A061DI28_THECC; Dof-type zinc finger DNA-binding family protein
STRING	EOX91892	2e-94	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5242	22	34