PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_25847_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 132aa MW: 15232.6 Da PI: 9.7896 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.6 | 1.9e-12 | 27 | 78 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+R +++N+ ++ Lr l+P + + K + a+i+ A++Y+k+L+ cra_locus_25847_iso_1_len_393_ver_3 27 QRMTHIAVERNRGKQMNEYLSMLRGLMPDN---YVLKGDQASIVGGAINYVKQLE 78 79****************************...9*******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 7.57E-11 | 25 | 82 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.0E-12 | 25 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.41E-16 | 26 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.043 | 26 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-9 | 27 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-8 | 32 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
XDAATSARSR RRRRSKIKRN QEEIENQRMT HIAVERNRGK QMNEYLSMLR GLMPDNYVLK 60 GDQASIVGGA INYVKQLEQR LQFLCSITHH LNETNESAAS SSSYNSPFSE FFIFPQYSTI 120 GLIMNNNDQS FX |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 12 | 18 | RRSKIKR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028059913.1 | 2e-44 | transcription factor bHLH94-like | ||||
Swissprot | Q9SK91 | 2e-36 | BH094_ARATH; Transcription factor bHLH94 | ||||
TrEMBL | A0A1R3JWF1 | 7e-43 | A0A1R3JWF1_9ROSI; Uncharacterized protein | ||||
STRING | XP_007144754.1 | 2e-43 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1996 | 24 | 62 |
Publications ? help Back to Top | |||
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