PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2560_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

G2-like

Protein Properties

Length: 356aa MW: 40003.9 Da PI: 5.9535

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2560_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.7	5.6e-33	20	74	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt+eLH+rFv+av+qLGG++kAtPk+++++m+++gLtl+h+kSHLQkYRl cra_locus_2560_iso_5_len_1231_ver_3 20 KPRLKWTQELHQRFVDAVNQLGGADKATPKSLMRVMGIHGLTLYHLKSHLQKYRL 74 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.917	17	77	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.6E-31	18	76	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.15E-16	19	75	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.3E-23	20	75	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-8	22	73	IPR001005	SANT/Myb domain
Pfam	PF14379	1.3E-21	121	168	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MTLQNLQNKD MNLVLSSDAK PRLKWTQELH QRFVDAVNQL GGADKATPKS LMRVMGIHGL 60 TLYHLKSHLQ KYRLGKSQQS QTYSEPKQEE QCEADEGENQ VTSQLSGEIC DKAQHQINES 120 MKIAQALQMQ MEVQRKLYEQ IEVQRHLQLR IEAQGKYLQS VLRKAQETLA GYNPSSAVGI 180 ELAKEELSQL VTMVDMGCCQ NSSLSALTDT DQENPILKHI ENKQQQFRSN GCSLESSLTS 240 SDQSSGLKEL AETRCGNDEN ENWTRQSVVL SLMEMQPGQK NGERKRMAAI SAKQQPSAKR 300 FQSQKSAADD DDQGERKFGF LETIDLNSKC IVSDFDSGTK IIDLNSKGVE QPNGYI

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MTLQNLQNKD MNLVLSSDAK PRLKWTQELH QRFVDAVNQL GGADKATPKS LMRVMGIHGL  60
TLYHLKSHLQ KYRLGKSQQS QTYSEPKQEE QCEADEGENQ VTSQLSGEIC DKAQHQINES  120
MKIAQALQMQ MEVQRKLYEQ IEVQRHLQLR IEAQGKYLQS VLRKAQETLA GYNPSSAVGI  180
ELAKEELSQL VTMVDMGCCQ NSSLSALTDT DQENPILKHI ENKQQQFRSN GCSLESSLTS  240
SDQSSGLKEL AETRCGNDEN ENWTRQSVVL SLMEMQPGQK NGERKRMAAI SAKQQPSAKR  300
FQSQKSAADD DDQGERKFGF LETIDLNSKC IVSDFDSGTK IIDLNSKGVE QPNGYI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-19	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-19	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-19	20	76	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-19	20	76	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-19	20	76	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-19	20	76	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-19	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-19	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-19	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-19	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-19	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-19	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027097729.1	1e-130	myb family transcription factor PHL8-like isoform X1
TrEMBL	A0A068TVN4	1e-109	A0A068TVN4_COFCA; Uncharacterized protein
TrEMBL	A0A2P6R2W1	1e-109	A0A2P6R2W1_ROSCH; Putative sterol 14-alpha-demethylase transcription factor MYB-HB-like family
STRING	XP_008339891.1	1e-115	(Malus domestica)