PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2560_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

G2-like

Protein Properties

Length: 302aa MW: 33884.8 Da PI: 5.1304

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2560_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	29.1	2.2e-09	1	20	36	55
G2-like 36 mkvkgLtlehvkSHLQkYRl 55 m+++gLtl+h+kSHLQkYRl cra_locus_2560_iso_4_len_1352_ver_3 1 MGIHGLTLYHLKSHLQKYRL 20 99*****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.5E-8	1	22	IPR009057	Homeodomain-like
Pfam	PF14379	1.0E-21	67	114	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MGIHGLTLYH LKSHLQKYRL GKSQQSQTYS EPKQEEQCEA DEGENQVTSQ LSGEICDKAQ 60 HQINESMKIA QALQMQMEVQ RKLYEQIEVQ RHLQLRIEAQ GKYLQSVLRK AQETLAGYNP 120 SSAVGIELAK EELSQLVTMV DMGCCQNSSL SALTDTDQEN PILKHIENKQ QQFRSNGCSL 180 ESSLTSSDQS SGLKELAETR CGNDENENWT RQSVVLSLME MQPGQKNGER KRMAAISAKQ 240 QPSAKRFQSQ KSAADDDDQG ERKFGFLETI DLNSKCIVSD FDSGTKIIDL NSKGVEQPNG 300 YI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027097729.1	3e-93	myb family transcription factor PHL8-like isoform X1
TrEMBL	A0A068TVN4	3e-79	A0A068TVN4_COFCA; Uncharacterized protein
STRING	XP_008339891.1	2e-78	(Malus domestica)