PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_2560_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 321aa MW: 35913 Da PI: 5.4827 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 56.8 | 4.9e-18 | 2 | 39 | 15 | 55 |
G2-like 15 veaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 v+av+qLG kAtPk+++++m+++gLtl+h+kSHLQkYRl cra_locus_2560_iso_2_len_1075_ver_3 2 VDAVNQLG---KATPKSLMRVMGIHGLTLYHLKSHLQKYRL 39 89*****4...9****************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-16 | 2 | 41 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.8E-11 | 2 | 40 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 8.6E-6 | 4 | 40 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 1.1E-21 | 86 | 133 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 321 aa Download sequence Send to blast |
XVDAVNQLGK ATPKSLMRVM GIHGLTLYHL KSHLQKYRLG KSQQSQTYSE PKQEEQCEAD 60 EGENQVTSQL SGEICDKAQH QINESMKIAQ ALQMQMEVQR KLYEQIEVQR HLQLRIEAQG 120 KYLQSVLRKA QETLAGYNPS SAVGIELAKE ELSQLVTMVD MGCCQNSSLS ALTDTDQENP 180 ILKHIENKQQ QFRSNGCSLE SSLTSSDQSS GLKELAETRC GNDENENWTR QSVVLSLMEM 240 QPGQKNGERK RMAAISAKQQ PSAKRFQSQK SAADDDDQGE RKFGFLETID LNSKCIVSDF 300 DSGTKIIDLN SKGVEQPNGY I |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027151333.1 | 1e-105 | myb family transcription factor PHL8-like | ||||
TrEMBL | A0A068TVN4 | 4e-85 | A0A068TVN4_COFCA; Uncharacterized protein | ||||
STRING | XP_008339891.1 | 1e-88 | (Malus domestica) |