PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2554_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NF-YC
Protein Properties Length: 258aa    MW: 28763.5 Da    PI: 6.4177
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2554_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.56.1e-56801831101
                                NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkr 71 
                                          ql++fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlr+w+h+eenkr
  cra_locus_2554_iso_5_len_1368_ver_3  80 QLQNFWSNQyqeIEQVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRAWNHTEENKR 153
                                          89******9999************************************************************** PP

                                NF-YC  72 rtlkksdiaaavtrtdifdflvdivprdel 101
                                          rtl+k+diaaa+trtdifdflvdivpr+el
  cra_locus_2554_iso_5_len_1368_ver_3 154 RTLQKNDIAAAITRTDIFDFLVDIVPREEL 183
                                          ***************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.51E-3470174IPR009072Histone-fold
PfamPF008083.3E-22102165IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.9E-38103180IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDQQGNGQPP GMGVVGSSAH VPYTIAPYQT NQMTSHSPPA SAGAVQTPQT AGLPSSAQMA  60
QHQLAYQHIH HQQQQQLQQQ LQNFWSNQYQ EIEQVTDFKN HSLPLARIKK IMKADEDVRM  120
ISAEAPVIFA RACEMFILEL TLRAWNHTEE NKRRTLQKND IAAAITRTDI FDFLVDIVPR  180
EELKDEMLAS IPRGSLPVGA PAEGVPYYYM PTQSAPQVGA SGMYVGKPVD QALYGQQPRP  240
PYMPPQMWPH QQPPPADS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-6188180395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152158RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027121247.11e-157nuclear transcription factor Y subunit C-9-like isoform X1
RefseqXP_027121248.11e-157nuclear transcription factor Y subunit C-9-like isoform X1
SwissprotQ8L4B22e-84NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLA0A076FU261e-135A0A076FU26_TOBAC; CONSTANS interacting protein 2b
TrEMBLA0A314L5H71e-135A0A314L5H7_NICAT; Nuclear transcription factor y subunit c-9
STRINGXP_009590081.11e-136(Nicotiana tomentosiformis)
Publications ? help Back to Top
  1. Hwang YH, et al.
    Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
    Plant Cell Rep., 2016. 35(4): p. 857-65
    [PMID:26754793]
  2. Liu X, et al.
    The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 12768
    [PMID:27624486]
  3. Myers ZA, et al.
    NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(9): p. e1006333
    [PMID:27685091]
  4. Tang Y, et al.
    Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
    Mol Plant, 2017. 10(2): p. 260-273
    [PMID:27876642]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  6. Gnesutta N, et al.
    CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer.
    Plant Cell, 2017. 29(6): p. 1516-1532
    [PMID:28526714]
  7. Bi C,Ma Y,Wang XF,Zhang DP
    Overexpression of the transcription factor NF-YC9 confers abscisic acid hypersensitivity in Arabidopsis.
    Plant Mol. Biol., 2017. 95(4-5): p. 425-439
    [PMID:28924726]
  8. Liu X, et al.
    Temporal-Specific Interaction of NF-YC and CURLY LEAF during the Floral Transition Regulates Flowering.
    Plant Physiol., 2018. 177(1): p. 105-114
    [PMID:29599268]