PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2554_iso_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NF-YC
Protein Properties Length: 182aa    MW: 20582.9 Da    PI: 6.7224
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2554_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.46.5e-5680181199
                               NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrr 72 
                                         ql++fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fi+eltlrsw+h+eenkrr
  cra_locus_2554_iso_3_len_832_ver_3  80 QLQNFWSNQyqeIEQVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFIMELTLRSWNHTEENKRR 154
                                         89******9999*************************************************************** PP

                               NF-YC  73 tlkksdiaaavtrtdifdflvdivprd 99 
                                         tl+k+diaaa+trtdifdflvdivpr+
  cra_locus_2554_iso_3_len_832_ver_3 155 TLQKNDIAAAITRTDIFDFLVDIVPRE 181
                                         *************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.18E-3470174IPR009072Histone-fold
PfamPF008083.9E-22102165IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.106.2E-38103180IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MDQQGNGQPP GMGVVGSSAH VPYTIAPYQT NQMTSHSPPA SAGAVQTPQT AGLPSSAQMA  60
QHQLAYQHIH HQQQQQLQQQ LQNFWSNQYQ EIEQVTDFKN HSLPLARIKK IMKADEDVRM  120
ISAEAPVIFA RACEMFIMEL TLRSWNHTEE NKRRTLQKND IAAAITRTDI FDFLVDIVPR  180
EX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B6e-6288180395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152158RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027116212.11e-109nuclear transcription factor Y subunit C-9-like isoform X1
RefseqXP_027116213.11e-109nuclear transcription factor Y subunit C-9-like isoform X1
RefseqXP_027116214.11e-109nuclear transcription factor Y subunit C-9-like isoform X1
RefseqXP_027116215.11e-109nuclear transcription factor Y subunit C-9-like isoform X1
SwissprotQ8L4B24e-67NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLA0A076FU263e-99A0A076FU26_TOBAC; CONSTANS interacting protein 2b
STRINGXP_009590081.11e-100(Nicotiana tomentosiformis)
Publications ? help Back to Top
  1. Hwang YH, et al.
    Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
    Plant Cell Rep., 2016. 35(4): p. 857-65
    [PMID:26754793]
  2. Liu X, et al.
    The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 12768
    [PMID:27624486]
  3. Myers ZA, et al.
    NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(9): p. e1006333
    [PMID:27685091]
  4. Tang Y, et al.
    Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
    Mol Plant, 2017. 10(2): p. 260-273
    [PMID:27876642]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  6. Gnesutta N, et al.
    CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer.
    Plant Cell, 2017. 29(6): p. 1516-1532
    [PMID:28526714]
  7. Bi C,Ma Y,Wang XF,Zhang DP
    Overexpression of the transcription factor NF-YC9 confers abscisic acid hypersensitivity in Arabidopsis.
    Plant Mol. Biol., 2017. 95(4-5): p. 425-439
    [PMID:28924726]
  8. Liu X, et al.
    Temporal-Specific Interaction of NF-YC and CURLY LEAF during the Floral Transition Regulates Flowering.
    Plant Physiol., 2018. 177(1): p. 105-114
    [PMID:29599268]