PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_2554_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NF-YC | ||||||||
Protein Properties | Length: 182aa MW: 20582.9 Da PI: 6.7224 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 178.4 | 6.5e-56 | 80 | 181 | 1 | 99 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrr 72 ql++fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fi+eltlrsw+h+eenkrr cra_locus_2554_iso_3_len_832_ver_3 80 QLQNFWSNQyqeIEQVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFIMELTLRSWNHTEENKRR 154 89******9999*************************************************************** PP NF-YC 73 tlkksdiaaavtrtdifdflvdivprd 99 tl+k+diaaa+trtdifdflvdivpr+ cra_locus_2554_iso_3_len_832_ver_3 155 TLQKNDIAAAITRTDIFDFLVDIVPRE 181 *************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.18E-34 | 70 | 174 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.9E-22 | 102 | 165 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 6.2E-38 | 103 | 180 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MDQQGNGQPP GMGVVGSSAH VPYTIAPYQT NQMTSHSPPA SAGAVQTPQT AGLPSSAQMA 60 QHQLAYQHIH HQQQQQLQQQ LQNFWSNQYQ EIEQVTDFKN HSLPLARIKK IMKADEDVRM 120 ISAEAPVIFA RACEMFIMEL TLRSWNHTEE NKRRTLQKND IAAAITRTDI FDFLVDIVPR 180 EX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 6e-62 | 88 | 180 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 152 | 158 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027116212.1 | 1e-109 | nuclear transcription factor Y subunit C-9-like isoform X1 | ||||
Refseq | XP_027116213.1 | 1e-109 | nuclear transcription factor Y subunit C-9-like isoform X1 | ||||
Refseq | XP_027116214.1 | 1e-109 | nuclear transcription factor Y subunit C-9-like isoform X1 | ||||
Refseq | XP_027116215.1 | 1e-109 | nuclear transcription factor Y subunit C-9-like isoform X1 | ||||
Swissprot | Q8L4B2 | 4e-67 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | A0A076FU26 | 3e-99 | A0A076FU26_TOBAC; CONSTANS interacting protein 2b | ||||
STRING | XP_009590081.1 | 1e-100 | (Nicotiana tomentosiformis) |