PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_2554_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NF-YC | ||||||||
Protein Properties | Length: 215aa MW: 23895.8 Da PI: 6.296 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 79.5 | 4.3e-25 | 91 | 140 | 52 | 101 |
NF-YC 52 elfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdel 101 e+fileltlr+w+h+eenkrrtl+k+diaaa+trtdifdflvdivpr+el cra_locus_2554_iso_1_len_1239_ver_3 91 EMFILELTLRAWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREEL 140 9**********************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 6.74E-14 | 87 | 137 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.5E-18 | 89 | 137 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.6E-6 | 90 | 122 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MDQQGNGQPP GMGVVGSSAH VPYTIAPYQT NQMTSHSPPA SAGAVQTPQT AGLPSSAQMA 60 QHQLAYQHIH HQQQQQLQQQ LQNFWSNQYQ EMFILELTLR AWNHTEENKR RTLQKNDIAA 120 AITRTDIFDF LVDIVPREEL KDEMLASIPR GSLPVGAPAE GVPYYYMPTQ SAPQVGASGM 180 YVGKPVDQAL YGQQPRPPYM PPQMWPHQQP PPADS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 8e-28 | 91 | 137 | 49 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
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Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 109 | 115 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027121247.1 | 1e-114 | nuclear transcription factor Y subunit C-9-like isoform X1 | ||||
Refseq | XP_027121248.1 | 1e-114 | nuclear transcription factor Y subunit C-9-like isoform X1 | ||||
Swissprot | Q8L4B2 | 5e-44 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | A0A076FU26 | 4e-93 | A0A076FU26_TOBAC; CONSTANS interacting protein 2b | ||||
TrEMBL | A0A314L5H7 | 3e-93 | A0A314L5H7_NICAT; Nuclear transcription factor y subunit c-9 | ||||
STRING | XP_009590081.1 | 6e-94 | (Nicotiana tomentosiformis) |