PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_25027_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 108aa MW: 12594.3 Da PI: 4.6146 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28 | 3.8e-09 | 45 | 84 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L cra_locus_25027_iso_1_len_415_ver_3 45 RHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 84 89*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.351 | 35 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.9E-12 | 41 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.99E-9 | 44 | 89 | No hit | No description |
SuperFamily | SSF47459 | 3.01E-14 | 44 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.7E-13 | 45 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-6 | 45 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 108 aa Download sequence Send to blast |
MEEEEEDQHH DEEEEAEEEL GTMKEMMFKI AAMQPVDIDP XXXARHRRER ISEKIRILQR 60 LVPGGTKMDT ASMLDEAIRY VKFLKRQIRE LQANQPPSLA VNSTCPPX |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator required for seed dispersal. Involved in the differentiation of all three cell types required for fruit dehiscence. Acts as the key regulator in a network including SHP and ALC that controls specification of the valve margin. Works with ALC, SHP, and FUL to allow differentiation of the lignified valve layer, the spring-loaded mechanism of fruit that promotes opening. Regulates the expression of the YJ80 marker. {ECO:0000269|PubMed:15035986}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By FUL, which restrict its expression to the margins. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027077794.1 | 4e-46 | transcription factor HEC3-like | ||||
Swissprot | O81313 | 2e-28 | IND_ARATH; Transcription factor IND | ||||
TrEMBL | A0A2Z7AI31 | 8e-38 | A0A2Z7AI31_9LAMI; Uncharacterized protein | ||||
STRING | cassava4.1_031791m | 1e-37 | (Manihot esculenta) | ||||
STRING | GRMZM2G354618_P01 | 1e-37 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA752 | 23 | 101 |